LXL04_013930 | RubberDandelionOmics

Gene overview

LXL04_013930

Reference: OH-1004 Chr: Chr03 Coordinates: 38303647-38306029 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1059 bp · LXL04_013930|LXL04_013930|OH1004|cDNA

ATGGCCGCTAAATGCAGTATCCCAGTCATCGATCTACATGATTTCCCCAATCAGTTATCCAAATTGATCTCAGCATGCGAAGAATGGGGCTGTTTCCGGCTACTCAACCACCAAGAAGTTCTCCCGCCGACGCTGATGTCGGAGATGAAGGCAGTAGTCAGATCACTCTTCGATTTACCGGTGGAGATCAAACGCCAGAACACCGACGTCATCACCGGAAGCGGATATATGGCTCCGACGGCGAAAAATCCGCTCTACGA...

CDS

Download CDS FASTA

1059 bp · LXL04_013930|LXL04_013930|OH1004|CDS

ATGGCCGCTAAATGCAGTATCCCAGTCATCGATCTACATGATTTCCCCAATCAGTTATCCAAATTGATCTCAGCATGCGAAGAATGGGGCTGTTTCCGGCTACTCAACCACCAAGAAGTTCTCCCGCCGACGCTGATGTCGGAGATGAAGGCAGTAGTCAGATCACTCTTCGATTTACCGGTGGAGATCAAACGCCAGAACACCGACGTCATCACCGGAAGCGGATATATGGCTCCGACGGCGAAAAATCCGCTCTACGA...

Protein

Download Protein FASTA

352 aa · LXL04_013930|LXL04_013930|OH1004|PROTEIN

MAAKCSIPVIDLHDFPNQLSKLISACEEWGCFRLLNHQEVLPPTLMSEMKAVVRSLFDLPVEIKRQNTDVITGSGYMAPTAKNPLYEALGLYDMSSPRDVETFCSQLDASPNQRDTIMGYAGAVHELFMGIGKKLAEGLGVKSENIGFEKWPCQFRINKYHFTPESVGSPGVQIHTDSGFLTILQDDEGVGGLEVMNKSGEFIAVDPWPGTLLVNLGDMATIWSNGRFCNVKHRVQCKEAKIRVSIASFLLGPREAVEPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013930`
TK1151 ID	TkA02G463370
OH-1004 ID	LXL04_013930
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 97.705 / OH-1004 84.659 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013930

Location Chr03:38303647-38306029 (+)

Description Similar to DAO: 2-oxoglutarate-dependent dioxygenase DAO

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38240`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0475600`	2-oxoglutarate-dependent dioxygenase essential for auxin catabolism and maintenance of auxin homeostasis in reproductive organs.	No verified direct reference in this release
`UniProt: Q01IX6`	2-oxoglutarate-dependent dioxygenase essential for auxin catabolism and maintenance of auxin homeostasis in reproductive organs.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013930 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006952 defense response Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0009852 auxin catabolic process Biological Process

GO:0042617 paclitaxel biosynthetic process Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900366 negative regulation of defense response to insect Biological Process

GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005506 iron ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G38240

dosa:Os04g0475600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.761

Rank 1 · LXL04_013930 · OH-1004

Nucleus0.352

Rank 2 · LXL04_013930 · OH-1004

Endoplasmic reticulum0.060

Rank 3 · LXL04_013930 · OH-1004

Cell membrane0.054

Rank 4 · LXL04_013930 · OH-1004

Plastid0.051

Rank 5 · LXL04_013930 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226.13DIOX_N7-78 aa

PF03171.272OG-FeII_Oxy153-250 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013930	`PF14226.13`	DIOX_N	7	78	1e-11	46.3
LXL04_013930	`PF03171.27`	2OG-FeII_Oxy	153	250	3.1e-23	82.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80449`	Arabidopsis thaliana	Jasmonate-induced oxygenase 4	32.550%	Swiss-Prot	moderate database homology
`Q7XKU5`	Oryza sativa subsp. japonica	2-oxoglutarate-dependent dioxygenase DAO	53.333%	Swiss-Prot	strong database homology
`Q01IX6`	Oryza sativa subsp. indica	2-oxoglutarate-dependent dioxygenase DAO	53.333%	Swiss-Prot	strong database homology

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