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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_013869
Reference: OH-1004 Chr: Chr03 Coordinates: 37234264-37235706 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1443 bp · LXL04_013869|LXL04_013869|OH1004|cDNA

ATGGGGAAGCTACCGCCATCACTCCGAACTGGTAAGAACCTAGGGTTACCAATTCGATCTCTAATTAAAAACGTCCAACAATCGCCTCAAGAATCAGAATTAGAATCACAGTCATCTTCCCATCACAGTCATAGAAAACCCAAATCAATCACCAAAAAGCCAAACACGTTCATCACCACCTCCCCCAGCCACCCCTCATCACCATCGCCGATAACCTTTACATCCCCTGAGATCTCCGCCGCCAAAACTCTGTTCAGCTC...

CDS

Download CDS FASTA

1443 bp · LXL04_013869|LXL04_013869|OH1004|CDS

ATGGGGAAGCTACCGCCATCACTCCGAACTGGTAAGAACCTAGGGTTACCAATTCGATCTCTAATTAAAAACGTCCAACAATCGCCTCAAGAATCAGAATTAGAATCACAGTCATCTTCCCATCACAGTCATAGAAAACCCAAATCAATCACCAAAAAGCCAAACACGTTCATCACCACCTCCCCCAGCCACCCCTCATCACCATCGCCGATAACCTTTACATCCCCTGAGATCTCCGCCGCCAAAACTCTGTTCAGCTC...

Protein

Download Protein FASTA

480 aa · LXL04_013869|LXL04_013869|OH1004|PROTEIN

MGKLPPSLRTGKNLGLPIRSLIKNVQQSPQESELESQSSSHHSHRKPKSITKKPNTFITTSPSHPSSPSPITFTSPEISAAKTLFSSLATTTRYSSILNNRFCNAVLQSFSSVSSNIQDSIILLNHMTKILPSFTPDKSSYHILLCQSCRKPDLDLANVNKTLHFMASKGFEPDKVTTDIAVRTLSSTGHEEHAIELIKKLSQVQFTKPDTYTYNFLVKRLVKTRTLSSVSVFINEMRDGFDVKPDLVTYTILIDNVCNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_013869
TK1151 IDTkA02G466910
OH-1004 IDLXL04_013869
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.500
Protein coverage (%)TK1151 57.917 / OH-1004 57.917
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_013869
LocationChr03:37234264-37235706 (-)
DescriptionSimilar to At2g17670: Pentatricopeptide repeat-containing protein At2g17670
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g17670 Pentatricopeptide repeat-containing protein At2g17670. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release
At3g53700 May be involved in female gametophyte development. No verified direct reference in this release
At1g09900 Pentatricopeptide repeat-containing protein At1g09900. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013869 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G12775
ath:AT2G17670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.817
Rank 1 · LXL04_013869 · OH-1004
Plastid0.076
Rank 2 · LXL04_013869 · OH-1004
Nucleus0.064
Rank 3 · LXL04_013869 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_013869 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_013869 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2209-259 aa
PF12854.14PPR_1242-272 aa
PF13812.13PPR_3242-292 aa
PF13041.13PPR_2245-293 aa
PF29070.1MSC6_N247-339 aa
PF17177.11PPR_long255-372 aa
PF13041.13PPR_2284-329 aa
PF17177.11PPR_long302-454 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_013869PF13041.13PPR_22092595.9e-79260.7
LXL04_013869PF12854.14PPR_12422722.9e-59197.2
LXL04_013869PF13812.13PPR_32422921.6e-33115.3
LXL04_013869PF13041.13PPR_22452935.9e-79260.7
LXL04_013869PF29070.1MSC6_N2473393.7e-1350.1
LXL04_013869PF17177.11PPR_long2553729e-2071.7
LXL04_013869PF13041.13PPR_22843295.9e-79260.7
LXL04_013869PF17177.11PPR_long3024549e-2071.7
LXL04_013869PF13812.13PPR_33043601.6e-33115.3
LXL04_013869PF23276.3TPR_243094106.1e-1556.0
LXL04_013869PF12854.14PPR_13133432.9e-59197.2
LXL04_013869PF13041.13PPR_23153645.9e-79260.7
LXL04_013869PF01535.27PPR3183477.6e-43142.5
LXL04_013869PF13812.13PPR_33403941.6e-33115.3
LXL04_013869PF12854.14PPR_13463792.9e-59197.2
LXL04_013869PF13041.13PPR_23503995.9e-79260.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84J71Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g1767053.222%Swiss-Protstrong database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial27.518%Swiss-Protweak database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262028.395%Swiss-Protweak database homology
Q9LFF1Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g53700, chloroplastic30.659%Swiss-Protmoderate database homology
Q3EDF8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g0990028.035%Swiss-Protweak database homology

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