LXL04_013783 | RubberDandelionOmics

Gene overview

LXL04_013783

Reference: OH-1004 Chr: Chr03 Coordinates: 36024148-36024786 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

639 bp · LXL04_013783|LXL04_013783|OH1004|cDNA

ATGGCACACTATGGAGGACAACAGGGTCAATACACCGACGAAGGAGTGGAAAGTTATGAGAAGAAAGGAATAATGGATAAAGTAAAGGAGCAACTGCCTGGTGGTGGTGAGCACAAGGATTCAGCCACAGCCACTGTGGGCGGTGGCAGAGGTGCATATGAGGGAGTTGAAGGGCATGAGAAGAAGGGAGCGATGGAAAAAATACAGGAGAAGCTACCGGGTGGTGGTGAGCACAAGGATTCAACCACAGCCACTATGGG...

CDS

Download CDS FASTA

639 bp · LXL04_013783|LXL04_013783|OH1004|CDS

ATGGCACACTATGGAGGACAACAGGGTCAATACACCGACGAAGGAGTGGAAAGTTATGAGAAGAAAGGAATAATGGATAAAGTAAAGGAGCAACTGCCTGGTGGTGGTGAGCACAAGGATTCAGCCACAGCCACTGTGGGCGGTGGCAGAGGTGCATATGAGGGAGTTGAAGGGCATGAGAAGAAGGGAGCGATGGAAAAAATACAGGAGAAGCTACCGGGTGGTGGTGAGCACAAGGATTCAACCACAGCCACTATGGG...

Protein

Download Protein FASTA

212 aa · LXL04_013783|LXL04_013783|OH1004|PROTEIN

MAHYGGQQGQYTDEGVESYEKKGIMDKVKEQLPGGGEHKDSATATVGGGRGAYEGVEGHEKKGAMEKIQEKLPGGGEHKDSTTATMGGGRGAYEGVEGHEKKGVMEKIQEKLPGGGEYKDSTTATVGGGRCAYEGVEGHEKKGAMEKIQEKLPGGGEHKDSTTATVGGGRGAYEGVEGPEKKGMVEKIKEKLPGGSEQKTSTTTTVGGSGGA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013783`
TK1151 ID	TkA02G471730
OH-1004 ID	LXL04_013783
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	81.100
Protein coverage (%)	TK1151 40.152 / OH-1004 25.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013783

Location Chr03:36024148-36024786 (+)

Description Similar to XERO2: Dehydrin Xero 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50970`	Dehydrin Xero 2.	No verified direct reference in this release
`At1g20440`	Dehydrin COR47.	No verified direct reference in this release
`At3g50980`	Dehydrin Xero 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013783 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009631 cold acclimation Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005829 cytosol Cellular Component

GO:0016020 membrane Cellular Component

GO:0005507 copper ion binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0016151 nickel cation binding Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G50970

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.681

Rank 1 · LXL04_013783 · OH-1004

Nucleus0.249

Rank 2 · LXL04_013783 · OH-1004

Cell membrane0.200

Rank 3 · LXL04_013783 · OH-1004

Mitochondrion0.076

Rank 4 · LXL04_013783 · OH-1004

Extracellular0.055

Rank 5 · LXL04_013783 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00257.25Dehydrin13-75 aa

PF00257.25Dehydrin78-115 aa

PF00257.25Dehydrin122-155 aa

PF00257.25Dehydrin135-195 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013783	`PF00257.25`	Dehydrin	13	75	9.6e-32	111.3
LXL04_013783	`PF00257.25`	Dehydrin	78	115	9.6e-32	111.3
LXL04_013783	`PF00257.25`	Dehydrin	122	155	9.6e-32	111.3
LXL04_013783	`PF00257.25`	Dehydrin	135	195	9.6e-32	111.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42758`	Arabidopsis thaliana	Dehydrin Xero 2	39.130%	Swiss-Prot	moderate database homology
`P31168`	Arabidopsis thaliana	Dehydrin COR47	42.609%	Swiss-Prot	weak database homology
`P25863`	Arabidopsis thaliana	Dehydrin Xero 1	54.386%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card