Gene Card
Gene overview
cDNA / CDS / Protein Sequences
447 bp · LXL04_013779|LXL04_013779|OH1004|cDNA
ATGGCACAATACGGAGGAGAGCAGTACGGCCACAAGGAGGGTGATCACCACACCGACGAGCATGCCCACAACCCACTGCAGTCGACCGGCGTCGTAGGTCATGAAACCGAAGGTACAAAAATCAGTACCATCGGAACAGAGCCTGGTTACGTCCATGAACAAGGTAAACATAATGGTACCGGTACCGGTGACGGCGCCGGAGGCATCCTCCATCGTTCCGGGAGTGGAAGTTCAAGCTCTTCGGAGGATGATGGAGAGGG...
447 bp · LXL04_013779|LXL04_013779|OH1004|CDS
ATGGCACAATACGGAGGAGAGCAGTACGGCCACAAGGAGGGTGATCACCACACCGACGAGCATGCCCACAACCCACTGCAGTCGACCGGCGTCGTAGGTCATGAAACCGAAGGTACAAAAATCAGTACCATCGGAACAGAGCCTGGTTACGTCCATGAACAAGGTAAACATAATGGTACCGGTACCGGTGACGGCGCCGGAGGCATCCTCCATCGTTCCGGGAGTGGAAGTTCAAGCTCTTCGGAGGATGATGGAGAGGG...
Protein
Download Protein FASTA148 aa · LXL04_013779|LXL04_013779|OH1004|PROTEIN
MAQYGGEQYGHKEGDHHTDEHAHNPLQSTGVVGHETEGTKISTIGTEPGYVHEQGKHNGTGTGDGAGGILHRSGSGSSSSSEDDGEGGRRKKKGVAEKIKEKLPGGDEHQTSTPATVGGTGVGYKGDEGHEKKGVMDKIKEKLPGSHQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013779 |
|---|---|
| TK1151 ID | TkA02G471880 |
| OH-1004 ID | LXL04_013779 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013779 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:35933349-35933886 (+) | |||||||||
| Description | Similar to RAB18: Dehydrin Rab18 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009414 response to water deprivation Biological Process GO:0009631 cold acclimation Biological Process GO:0009737 response to abscisic acid Biological Process GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005507 copper ion binding Molecular Function GO:0016151 nickel cation binding Molecular Function GO:0046872 metal ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G50980 ath:AT5G66400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00257.25Dehydrin16-147 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013779 | PF00257.25 | Dehydrin | 16 | 147 | 7.8e-32 | 111.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.