LXL04_013642 | RubberDandelionOmics

Gene overview

LXL04_013642

Reference: OH-1004 Chr: Chr03 Coordinates: 33378941-33379756 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_013642|LXL04_013642|OH1004|cDNA

ATGGGGATTTCCAGACTGACACTGGTTTTGATGCTAATGTCTGCGTTCTTGCCACCATCCTCACCAGATCCCGATGATGAATCTTGTTTGACCAAATTGTTTGAATCTATGGAAGACCCGAATCATAATCTCATGAATTGGACCAAACCCAGCTTCCAAAACCCCTGTTCTGGCTTCCTCTCGAGCCTCGCCGGAGCAACCTGCAACAACGGCCGCATCTACAAGCTCTCGCTTCCCAACCTCGCCCTTCGTGGCTCTAT...

CDS

Download CDS FASTA

816 bp · LXL04_013642|LXL04_013642|OH1004|CDS

ATGGGGATTTCCAGACTGACACTGGTTTTGATGCTAATGTCTGCGTTCTTGCCACCATCCTCACCAGATCCCGATGATGAATCTTGTTTGACCAAATTGTTTGAATCTATGGAAGACCCGAATCATAATCTCATGAATTGGACCAAACCCAGCTTCCAAAACCCCTGTTCTGGCTTCCTCTCGAGCCTCGCCGGAGCAACCTGCAACAACGGCCGCATCTACAAGCTCTCGCTTCCCAACCTCGCCCTTCGTGGCTCTAT...

Protein

Download Protein FASTA

271 aa · LXL04_013642|LXL04_013642|OH1004|PROTEIN

MGISRLTLVLMLMSAFLPPSSPDPDDESCLTKLFESMEDPNHNLMNWTKPSFQNPCSGFLSSLAGATCNNGRIYKLSLPNLALRGSISPYISNCTNLQALDISNNSLTGPIPIELQYLVNLAVLNLSSNRLSATIPPSLAMCAYLNVIDLHDNTLTGTIPPQLGSLARLSVFDVSNNKLSGPIPASLGNRTGNLPRFNASSYLGNKDLYGYPLGPMKSKGLSLVAIVGIGLGSGLLSLVLSFTVVCVWLRVTEQKMAAEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013642`
TK1151 ID	TkA02G482200
OH-1004 ID	LXL04_013642
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013642

Location Chr03:33378941-33379756 (+)

Description Similar to RLP44: Receptor-like protein 44

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49750`	Receptor-like protein 44.	No verified direct reference in this release
`At5g65830`	Receptor-like protein 57.	No verified direct reference in this release
`At3g28450`	Pseudokinases lacking protein kinase activity and unable to bind ATP-analogs.	Structure of the pseudokinase domain of BIR2, a regulator of BAK1-mediated immune signaling in Arabidopsis.2014 · DOI: 10.1016/j.jsb.2014.02.005
`At5g48380`	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380.	No verified direct reference in this release
`At1g69990`	Probable LRR receptor-like serine/threonine-protein kinase At1g69990.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013642 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045088 regulation of innate immune response Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900425 negative regulation of defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G69990

ath:AT3G28450

ath:AT3G49750

ath:AT5G48380

ath:AT5G65830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.857

Rank 1 · LXL04_013642 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_013642 · OH-1004

Cytoplasm0.065

Rank 3 · LXL04_013642 · OH-1004

Nucleus0.037

Rank 4 · LXL04_013642 · OH-1004

Lysosome / Vacuole0.031

Rank 5 · LXL04_013642 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855.13LRR_892-131 aa

PF24141.2LRR_ComC92-187 aa

PF12799.14LRR_495-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013642	`PF13855.13`	LRR_8	92	131	6.8e-11	42.5
LXL04_013642	`PF24141.2`	LRR_ComC	92	187	2.2e-06	28.3
LXL04_013642	`PF12799.14`	LRR_4	95	135	2.7e-09	37.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M2Y3`	Arabidopsis thaliana	Receptor-like protein 44	70.866%	Swiss-Prot	strong database homology
`Q9FH86`	Arabidopsis thaliana	Receptor-like protein 57	69.076%	Swiss-Prot	strong database homology
`Q9LSI9`	Arabidopsis thaliana	Inactive LRR receptor-like serine/threonine-protein kinase BIR2	36.328%	Swiss-Prot	moderate database homology
`Q9ASS4`	Arabidopsis thaliana	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	33.858%	Swiss-Prot	moderate database homology
`C0LGI5`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g69990	33.594%	Swiss-Prot	moderate database homology

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