LXL04_013619 | RubberDandelionOmics

Gene overview

LXL04_013619

Reference: OH-1004 Chr: Chr03 Coordinates: 32868055-32870735 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2460 bp · LXL04_013619|LXL04_013619|OH1004|cDNA

ATGAGACTTCTTTTCATCTTATCTTTTTTAACTTTACTCTCCGCCCACCCCACCAGAAGAATTCTCCACCAGCCACTTTTTCCGGCCACTTCAGTTCCGCCACCGGACACGCAATTCCCACCGCCTACCCCCGCCGTCATCTCCACTCCCACTCCCGACCTCCCTTTCTTCAATGAAGACCCAAATAGCCAGACACCGGTACCAGATCAGACCCAGGTGCTGCCACCACCAACACCACCGTTGGTGGTCGGCGCCGACAC...

CDS

Download CDS FASTA

2460 bp · LXL04_013619|LXL04_013619|OH1004|CDS

ATGAGACTTCTTTTCATCTTATCTTTTTTAACTTTACTCTCCGCCCACCCCACCAGAAGAATTCTCCACCAGCCACTTTTTCCGGCCACTTCAGTTCCGCCACCGGACACGCAATTCCCACCGCCTACCCCCGCCGTCATCTCCACTCCCACTCCCGACCTCCCTTTCTTCAATGAAGACCCAAATAGCCAGACACCGGTACCAGATCAGACCCAGGTGCTGCCACCACCAACACCACCGTTGGTGGTCGGCGCCGACAC...

Protein

Download Protein FASTA

819 aa · LXL04_013619|LXL04_013619|OH1004|PROTEIN

MRLLFILSFLTLLSAHPTRRILHQPLFPATSVPPPDTQFPPPTPAVISTPTPDLPFFNEDPNSQTPVPDQTQVLPPPTPPLVVGADTSNNPVSHPIAPQPAVKPAKKIAVAISVGIVTLGMLSALAFFIYKHKSKHPTESQKLVGRRNSDDGMPPSTFLYIGTVEPSRSVNEATNGPTNVSPYHKLGSVKTSERYRPSPDLQPLPSLSKPQPPPTTMSPPAMSSSDDEETNDFYTPNRSIASTEEQNSIPKSKHRHSLNN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013619`
TK1151 ID	TkA02G483940
OH-1004 ID	LXL04_013619
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013619

Location Chr03:32868055-32870735 (+)

Description Similar to FH6: Formin-like protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67470`	Might be involved in the organization and polarity of the actin cytoskeleton.	No verified direct reference in this release
`At3g25500`	Might be involved in the organization and polarity of the actin cytoskeleton.	Overexpression of an Arabidopsis formin stimulates supernumerary actin cable formation from pollen tube cell membrane.2004 · DOI: 10.1105/tpc.016550 The formin homology 1 domain modulates the actin nucleation and bundling activity of Arabidopsis FORMIN1.2005 · DOI: 10.1105/tpc.105.030908

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0204100`	Formin-like protein 8.	No verified direct reference in this release
`Os01g0897700`	Formin-like protein 1.	No verified direct reference in this release
`Os09g0517600`	Formin-like protein 15.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013619 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030036 actin cytoskeleton organization Biological Process

GO:0045010 actin nucleation Biological Process

GO:0051016 barbed-end actin filament capping Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005819 spindle Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G25500

ath:AT5G67470

dosa:Os01g0897700

dosa:Os03g0204100

dosa:Os09g0517600

osa:4325107

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.754

Rank 1 · LXL04_013619 · OH-1004

Cytoplasm0.158

Rank 2 · LXL04_013619 · OH-1004

Nucleus0.150

Rank 3 · LXL04_013619 · OH-1004

Endoplasmic reticulum0.048

Rank 4 · LXL04_013619 · OH-1004

Plastid0.031

Rank 5 · LXL04_013619 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02181.29FH2394-766 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013619	`PF02181.29`	FH2	394	766	1.1e-114	384.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJX6`	Arabidopsis thaliana	Formin-like protein 6	73.770%	Swiss-Prot	moderate database homology
`Q9SE97`	Arabidopsis thaliana	Formin-like protein 1	61.520%	Swiss-Prot	weak database homology
`Q10Q99`	Oryza sativa subsp. japonica	Formin-like protein 8	65.591%	Swiss-Prot	moderate database homology
`Q8S0F0`	Oryza sativa subsp. japonica	Formin-like protein 1	59.823%	Swiss-Prot	moderate database homology
`Q69MT2`	Oryza sativa subsp. japonica	Formin-like protein 15	54.545%	Swiss-Prot	moderate database homology

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