Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1029 bp · LXL04_013574|LXL04_013574|OH1004|cDNA
CGTGCTCCACTTCGGTATTTTTGGGATGCAGGACCACGTGGCATAGGGAATGAAACCAAATACAAACACACCAGTCACCACCTCCTGAAACCCCGAAACCAAAAAGAGGCGGGTTTATCCCGAACAACTGCGCTAATGGGGAGTTCCAAGGAGGATTCGGCCACCGGTGCCGACAATTCCGCCGGCAGTCGCCGTCGCGTTGATTCTAATTCGAAGCTCTTCTCCGATGGCGAGAAAGTCCTCGCTTACCATGGCCCTCG...
945 bp · LXL04_013574|LXL04_013574|OH1004|CDS
CTGAAACCCCGAAACCAAAAAGAGGCGGGTTTATCCCGAACAACTGCGCTAATGGGGAGTTCCAAGGAGGATTCGGCCACCGGTGCCGACAATTCCGCCGGCAGTCGCCGTCGCGTTGATTCTAATTCGAAGCTCTTCTCCGATGGCGAGAAAGTCCTCGCTTACCATGGCCCTCGTATCTACGAAGCCAAGGTTCAAAAATCCGAAATTCGGAAGAATGAGTGGAAATATTTCGTTCATTACCTTGGTTGGAGTAAAAC...
Protein
Download Protein FASTA314 aa · LXL04_013574|LXL04_013574|OH1004|PROTEIN
MKPRNQKEAGLSRTTALMGSSKEDSATGADNSAGSRRRVDSNSKLFSDGEKVLAYHGPRIYEAKVQKSEIRKNEWKYFVHYLGWSKTWDEWVGVDRLMKNSEENILKQQALDKKQGVERNPKSGGRSNQTKPKISSGTKGKKRKNDSSTEKEIASVDKLINIEIPSALKQQLVDDWEFVNEQDKLVELPRSPNIDDIFEKYLEYKSKKMTDSVGEIVKGLRCYFDRALPVILLYNKERHQYREAVTDNVSPSTIYGAEHL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013574 |
|---|---|
| TK1151 ID | TkA02G487160 |
| OH-1004 ID | LXL04_013574 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 91.813 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013574 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:31980398-31983019 (-) | |||||||||
| Description | Similar to MRG1: Protein MRG1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006281 DNA repair Biological Process GO:0006325 chromatin organization Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0008283 cell population proliferation Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process GO:0048586 regulation of long-day photoperiodism, flowering Biological Process GO:0051726 regulation of cell cycle Biological Process GO:1905168 positive regulation of double-strand break repair via homologous recombination Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G02740 ath:AT4G37280 pon:100174761 rno:300891 uma:UMAG_10504 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22732.3MSL3_chromo-like46-112 aaPF11717.15Tudor-knot47-97 aaPF05712.19MRG141-307 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013574 | PF22732.3 | MSL3_chromo-like | 46 | 112 | 1.1e-15 | 58.1 |
| LXL04_013574 | PF11717.15 | Tudor-knot | 47 | 97 | 1.6e-11 | 44.6 |
| LXL04_013574 | PF05712.19 | MRG | 141 | 307 | 1.3e-48 | 165.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.