LXL04_013494 | RubberDandelionOmics

Gene overview

LXL04_013494

Reference: OH-1004 Chr: Chr03 Coordinates: 30441976-30443745 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1290 bp · LXL04_013494|LXL04_013494|OH1004|cDNA

ATGGCTTCTAAGGATCTTCATACTCTTATTCTAGCTTTATTTCTGCTCACTGCTTACACTATTGCTGCTACAGATGATAATGGAGGCGAGGCCTTGGGGGCTTCTTATATATTCGGCGATTCTTTGGTAGATGCCGGAAATAATAACTTTTTGCCAACATTATCTAAAGCTAACATCAAACCCAATGGAATTGACTTTAAAGCGTCCGGGGGTAAACCTACTGGCCGCTACACCAACGGAAGAACAATCGGAGACATCAT...

CDS

Download CDS FASTA

1290 bp · LXL04_013494|LXL04_013494|OH1004|CDS

ATGGCTTCTAAGGATCTTCATACTCTTATTCTAGCTTTATTTCTGCTCACTGCTTACACTATTGCTGCTACAGATGATAATGGAGGCGAGGCCTTGGGGGCTTCTTATATATTCGGCGATTCTTTGGTAGATGCCGGAAATAATAACTTTTTGCCAACATTATCTAAAGCTAACATCAAACCCAATGGAATTGACTTTAAAGCGTCCGGGGGTAAACCTACTGGCCGCTACACCAACGGAAGAACAATCGGAGACATCAT...

Protein

Download Protein FASTA

429 aa · LXL04_013494|LXL04_013494|OH1004|PROTEIN

MASKDLHTLILALFLLTAYTIAATDDNGGEALGASYIFGDSLVDAGNNNFLPTLSKANIKPNGIDFKASGGKPTGRYTNGRTIGDIIVTKCYDLFIGEELGQKHYAVPFLDPNSTGQALLYGVNYASGGGGIMNGTGRIFVNRLSMDIQIDYFNITRKQIDKLLGASKAKEHIMKKSIFSITIGSNDFLNNYLLPVLSIGARVSQTPDSFVDDLLSHLRSQLTRLYQLDARKFILGNVGPIGCIPYQRTINQLNEDECVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013494`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_013494

Location Chr03:30441976-30443745 (+)

Description Similar to At2g23540: GDSL esterase/lipase At2g23540

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At5g41890`	GDSL esterase/lipase At5g41890.	No verified direct reference in this release
`At5g15720`	GDSL esterase/lipase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013494 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G23540

ath:AT3G50400

ath:AT4G16230

ath:AT5G15720

ath:AT5G41890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.543

Rank 1 · LXL04_013494 · OH-1004

Endoplasmic reticulum0.117

Rank 2 · LXL04_013494 · OH-1004

Lysosome / Vacuole0.117

Rank 3 · LXL04_013494 · OH-1004

Cell membrane0.082

Rank 4 · LXL04_013494 · OH-1004

Cytoplasm0.081

Rank 5 · LXL04_013494 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL37-363 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013494	`PF00657.29`	Lipase_GDSL	37	363	1.9e-30	107.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80470`	Arabidopsis thaliana	GDSL esterase/lipase At2g23540	72.222%	Swiss-Prot	strong database homology
`Q9M2R9`	Arabidopsis thaliana	GDSL esterase/lipase At3g50400	63.904%	Swiss-Prot	strong database homology
`O23470`	Arabidopsis thaliana	GDSL esterase/lipase At4g16230	47.872%	Swiss-Prot	moderate database homology
`Q9FJ25`	Arabidopsis thaliana	GDSL esterase/lipase At5g41890	43.175%	Swiss-Prot	moderate database homology
`Q8LFJ9`	Arabidopsis thaliana	GDSL esterase/lipase 7	41.311%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card