LXL04_013421 | RubberDandelionOmics

Gene overview

LXL04_013421

Reference: OH-1004 Chr: Chr03 Coordinates: 29352088-29352603 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

438 bp · LXL04_013421|LXL04_013421|OH1004|cDNA

ATGGAAGCAGCATTGCAGAAACAGCTTTTTCTGAACAATCATCGGCTAATTTCAGCAAGAACACCACCATTTGTCCACCAGAGATTGGGTTTTGCAACTCAATTTTTGAGTCACTCCGGTTTCCCCAAATTTCCGATTGTGGAACGGCATCACAAAAATACAACAAAGATTCATGCAAGGAGAAGGAGATCAAACATGGAAACTGATACGTATGTATTAATGGAGCCAGGGAAGGCTGAAGAATTTGTAGACGAGGAAGA...

CDS

Download CDS FASTA

438 bp · LXL04_013421|LXL04_013421|OH1004|CDS

ATGGAAGCAGCATTGCAGAAACAGCTTTTTCTGAACAATCATCGGCTAATTTCAGCAAGAACACCACCATTTGTCCACCAGAGATTGGGTTTTGCAACTCAATTTTTGAGTCACTCCGGTTTCCCCAAATTTCCGATTGTGGAACGGCATCACAAAAATACAACAAAGATTCATGCAAGGAGAAGGAGATCAAACATGGAAACTGATACGTATGTATTAATGGAGCCAGGGAAGGCTGAAGAATTTGTAGACGAGGAAGA...

Protein

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145 aa · LXL04_013421|LXL04_013421|OH1004|PROTEIN

MEAALQKQLFLNNHRLISARTPPFVHQRLGFATQFLSHSGFPKFPIVERHHKNTTKIHARRRRSNMETDTYVLMEPGKAEEFVDEEELRLRLKNWLENWPATSLPPDLARFESIDDAVSFLVKSVCELEIDGEVGSIQWYEVSLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013421`
TK1151 ID	TkA02G497230
OH-1004 ID	LXL04_013421
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 55.172 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013421

Location Chr03:29352088-29352603 (-)

Description Similar to CRR7: Protein CHLORORESPIRATORY REDUCTION 7, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39210`	Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex of the photosynthetic electron transport chain.	Identification of a novel protein, CRR7, required for the stabilization of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.2005 · DOI: 10.1111/j.1365-313x.2005.02604.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013421 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G39210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.960

Rank 1 · LXL04_013421 · OH-1004

Nucleus0.057

Rank 2 · LXL04_013421 · OH-1004

Mitochondrion0.026

Rank 3 · LXL04_013421 · OH-1004

Cytoplasm0.016

Rank 4 · LXL04_013421 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_013421 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12095.14CRR766-145 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013421	`PF12095.14`	CRR7	66	145	2.6e-26	92.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FL87`	Arabidopsis thaliana	Protein CHLORORESPIRATORY REDUCTION 7, chloroplastic	50.641%	Swiss-Prot	strong database homology

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