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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

LXL04_013418
Reference: OH-1004 Chr: Chr03 Coordinates: 29323821-29327949 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

1908 bp · LXL04_013418|LXL04_013418|OH1004|cDNA

ATGGTTTTCATCTCTATTAACACGAAAGAAGGCATACCAAATAAAACCGAAAAAGTCTCAGTTTATGAGTTTAATGAGATTCAGATGTTGGAACGACAAATTATGTTCAAGCAGTTACAAGAACTCCAGAGGCAAAAAAACCTTCTAGAATTAAATGACGCCCATAAAAAAAACGTGACTCAATACGGACTGCTAAATCACGGCGTACCAGTTCGCGATGCATCCCAAATGTTCATGTTTGGTGACACAAATCCGGTTCA...

1908 bp · LXL04_013418|LXL04_013418|OH1004|CDS

ATGGTTTTCATCTCTATTAACACGAAAGAAGGCATACCAAATAAAACCGAAAAAGTCTCAGTTTATGAGTTTAATGAGATTCAGATGTTGGAACGACAAATTATGTTCAAGCAGTTACAAGAACTCCAGAGGCAAAAAAACCTTCTAGAATTAAATGACGCCCATAAAAAAAACGTGACTCAATACGGACTGCTAAATCACGGCGTACCAGTTCGCGATGCATCCCAAATGTTCATGTTTGGTGACACAAATCCGGTTCA...

635 aa · LXL04_013418|LXL04_013418|OH1004|PROTEIN

MVFISINTKEGIPNKTEKVSVYEFNEIQMLERQIMFKQLQELQRQKNLLELNDAHKKNVTQYGLLNHGVPVRDASQMFMFGDTNPVHGLPNRFVYSQTQAPNPVHLVHFQAPVLSQSQTMKPQKVNNQGFDSLDPLEQKVLFNVEYNNTENVFEKTDNKSVFNYGVLMQSAVSEVSNGDSGSVLSFQNPDENYQNSNMVESGKHYNQTSWLYNNNNDYSGISGFMDRSFVKKEDGEKRSTLEVKPGIGKNQQVTSSRRQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_013418
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_013418
LocationChr03:29323821-29327949 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
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Functional annotation source: OH1004 · LXL04_013418 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.956
Rank 1 · LXL04_013418 · OH-1004
Cytoplasm0.117
Rank 2 · LXL04_013418 · OH-1004
Cell membrane0.023
Rank 3 · LXL04_013418 · OH-1004
Mitochondrion0.012
Rank 4 · LXL04_013418 · OH-1004
Endoplasmic reticulum0.010
Rank 5 · LXL04_013418 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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