LXL04_013281 | RubberDandelionOmics

Gene overview

LXL04_013281

Reference: OH-1004 Chr: Chr03 Coordinates: 26996529-26997588 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

378 bp · LXL04_013281|LXL04_013281|OH1004|cDNA

ATGGATGCTGCTGCAAGTCCTTCTTTCCCTGTCCGCTACAAGAAATTCTCAATCGATATCAAGGAAAGTAAGATCAATATAGTCATCTGCAGCCACGATGATCAGTTCATGATTATCGCTACTGAAATTGGGACTATGGGAACCATAATGCATGCAAGgaaAGAGGAAGGGATGTTGAACAATCCTACTTTCAATGTATCTGTGATATTTGGTAAACGAGACGAGCCAATGCTAGTGGCATGTGCTCGCCAGCTTATTGA...

CDS

Download CDS FASTA

378 bp · LXL04_013281|LXL04_013281|OH1004|CDS

ATGGATGCTGCTGCAAGTCCTTCTTTCCCTGTCCGCTACAAGAAATTCTCAATCGATATCAAGGAAAGTAAGATCAATATAGTCATCTGCAGCCACGATGATCAGTTCATGATTATCGCTACTGAAATTGGGACTATGGGAACCATAATGCATGCAAGGAAAGAGGAAGGGATGTTGAACAATCCTACTTTCAATGTATCTGTGATATTTGGTAAACGAGACGAGCCAATGCTAGTGGCATGTGCTCGCCAGCTTATTGA...

Protein

Download Protein FASTA

125 aa · LXL04_013281|LXL04_013281|OH1004|PROTEIN

MDAAASPSFPVRYKKFSIDIKESKINIVICSHDDQFMIIATEIGTMGTIMHARKEEGMLNNPTFNVSVIFGKRDEPMLVACARQLIEHISNSGSSKPLTLSLGLKDHSMETLKGIVSAVIQNKLW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013281`
TK1151 ID	TkA02G508000
OH-1004 ID	LXL04_013281
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_013281`
Location	Chr03:26996529-26997588 (+)
Description	Similar to psmG3: Proteasome assembly chaperone 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_013281` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0043248 proteasome assembly Biological Process GO:0051131 chaperone-mediated protein complex assembly Biological Process GO:0080129 proteasome core complex assembly Biological Process GO:0005829 cytosol Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0101031 protein folding chaperone complex Cellular Component GO:0044877 protein-containing complex binding Molecular Function GO:0060090 molecular adaptor activity Molecular Function
KEGG gene cross-reference	bta:510741 ddi:DDB_G0268522 hsa:84262 mmu:66506 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654

Rank 1 · LXL04_013281 · OH-1004

Nucleus0.397

Rank 2 · LXL04_013281 · OH-1004

Mitochondrion0.083

Rank 3 · LXL04_013281 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_013281 · OH-1004

Cell membrane0.056

Rank 5 · LXL04_013281 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10178.15PAC338-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013281	`PF10178.15`	PAC3	38	121	2.5e-31	108.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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