LXL04_013205 | RubberDandelionOmics

Gene overview

LXL04_013205

Reference: OH-1004 Chr: Chr03 Coordinates: 25919924-25930377 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1602 bp · LXL04_013205|LXL04_013205|OH1004|cDNA

atgGATCTTCAATTCAACGGACATCTTCTTGCTTCTCACCCTATTGTTGCTGCACAATTCGTTCAACCTACTGTTGCACCATCAACATTGAAAGTCATCCACACTGCAACAGTCGCTTCTACTTCTACAAACTGGGGGAAACAATGTTGTTTCTCGGATCTTGAAATAATCATTTCAGTAAATGGTGGTAAGATGAAGTTGGCAAGTTGCTGTAATGAAGTTGCTGCAGAGCTTATAGTTAAGGTGAATCGTGTTGATCA...

CDS

Download CDS FASTA

1602 bp · LXL04_013205|LXL04_013205|OH1004|CDS

ATGGATCTTCAATTCAACGGACATCTTCTTGCTTCTCACCCTATTGTTGCTGCACAATTCGTTCAACCTACTGTTGCACCATCAACATTGAAAGTCATCCACACTGCAACAGTCGCTTCTACTTCTACAAACTGGGGGAAACAATGTTGTTTCTCGGATCTTGAAATAATCATTTCAGTAAATGGTGGTAAGATGAAGTTGGCAAGTTGCTGTAATGAAGTTGCTGCAGAGCTTATAGTTAAGGTGAATCGTGTTGATCA...

Protein

Download Protein FASTA

533 aa · LXL04_013205|LXL04_013205|OH1004|PROTEIN

MDLQFNGHLLASHPIVAAQFVQPTVAPSTLKVIHTATVASTSTNWGKQCCFSDLEIIISVNGGKMKLASCCNEVAAELIVKVNRVDHLHATTNCTGWLRKGQRYAIWPSLPLANMVEWQKAAAKFIGLATPMMADWSDNESDFTEQIAMMAMMGMQRVVEILEESEEEEGVVNSQPMTRQPIPRDRVGAHNRLIAHYFAPNCDYPPSVFRRRFRMHKPLFLRILNDVTANSNYMQQRSDATGSRGFSELQKCAVAIRQLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013205`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013205

Location Chr03:25919924-25930377 (-)

Description Similar to At3g55350: Protein ALP1-like

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55350`	Transposase-derived protein that may have nuclease activity.	No verified direct reference in this release
`At3g63270`	Transposase-derived protein that may have nuclease activity (Probable).	Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.2015 · DOI: 10.1371/journal.pgen.1005660

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013205 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0000118 histone deacetylase complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0035098 ESC/E(Z) complex Cellular Component

GO:0035102 PRC1 complex Cellular Component

GO:0003682 chromatin binding Molecular Function

GO:0004518 nuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G55350

ath:AT3G63270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.751

Rank 1 · LXL04_013205 · OH-1004

Cytoplasm0.283

Rank 2 · LXL04_013205 · OH-1004

Mitochondrion0.049

Rank 3 · LXL04_013205 · OH-1004

Cell membrane0.038

Rank 4 · LXL04_013205 · OH-1004

Endoplasmic reticulum0.029

Rank 5 · LXL04_013205 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28509.1DUF8418190-228 aa

PF04827.21Plant_tran310-386 aa

PF13359.13DDE_Tnp_4324-455 aa

PF04827.21Plant_tran385-463 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013205	`PF28509.1`	DUF8418	190	228	6.8e-17	61.7
LXL04_013205	`PF04827.21`	Plant_tran	310	386	7.4e-46	157.1
LXL04_013205	`PF13359.13`	DDE_Tnp_4	324	455	6.2e-13	49.4
LXL04_013205	`PF04827.21`	Plant_tran	385	463	7.4e-46	157.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2U3`	Arabidopsis thaliana	Protein ALP1-like	24.116%	Swiss-Prot	weak database homology
`Q94K49`	Arabidopsis thaliana	Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1	22.549%	Swiss-Prot	weak database homology

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