LXL04_013123 | RubberDandelionOmics

Gene overview

LXL04_013123

Reference: OH-1004 Chr: Chr03 Coordinates: 24443579-24459082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1698 bp · LXL04_013123|LXL04_013123|OH1004|cDNA

ATGGGAGACGTTGTGTCCGGTAAGAATCTGATACCGGATAGTTTTCCGGGGGCATCGGTGGACTTGGCGGCGCAAATTGGGCTGTTATGGGACCTAATTAAGGCGCCATTGATCGTGCCATTGTTGAGATTGGCTGTTTATATCTGTTTGGCGATGACGGTGATGCTGTTTCTCGAAAGACTTTACATGGGTATTGTAATTGTCCTCGTTAAGCTGTTTTGGAAAAAGCCCGAGAAGCGATACAATTGGGAACCCATTCG...

CDS

Download CDS FASTA

1698 bp · LXL04_013123|LXL04_013123|OH1004|CDS

ATGGGAGACGTTGTGTCCGGTAAGAATCTGATACCGGATAGTTTTCCGGGGGCATCGGTGGACTTGGCGGCGCAAATTGGGCTGTTATGGGACCTAATTAAGGCGCCATTGATCGTGCCATTGTTGAGATTGGCTGTTTATATCTGTTTGGCGATGACGGTGATGCTGTTTCTCGAAAGACTTTACATGGGTATTGTAATTGTCCTCGTTAAGCTGTTTTGGAAAAAGCCCGAGAAGCGATACAATTGGGAACCCATTCG...

Protein

Download Protein FASTA

565 aa · LXL04_013123|LXL04_013123|OH1004|PROTEIN

MGDVVSGKNLIPDSFPGASVDLAAQIGLLWDLIKAPLIVPLLRLAVYICLAMTVMLFLERLYMGIVIVLVKLFWKKPEKRYNWEPIRDDLEIGNSAFPLVLIQIPMFNEKEVYKISIGAACNLSWPSDRLVIQVLDDSTDFVIKDMIEKECQRWASKGVNIRYQIRESRGGYKAGALKEGLKHDYVKDCEYVTIFDADFRPEPDFLRRAIPFLEFNPQIALVQARWRFVNSDECLLTRMQEMSLDYHFTVEQEVGSATHA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013123`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013123

Location Chr03:24443579-24459082 (-)

Description Similar to CSLA2: Glucomannan 4-beta-mannosyltransferase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22740`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release
`At5g03760`	Possesses glucomannan synthase and mannan synthase activities in vitro.	Agrobacterium-mediated root transformation is inhibited by mutation of an Arabidopsis cellulose synthase-like gene.2003 · DOI: 10.1104/pp.103.030726
`At1g23480`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0625700`	Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose.	No verified direct reference in this release
`Os02g0192500`	Possesses glucomannan synthase and mannan synthase activities in vitro.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013123 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009294 DNA-mediated transformation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0010192 mucilage biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0047259 glucomannan 4-beta-mannosyltransferase activity Molecular Function

GO:0051753 mannan synthase activity Molecular Function

KEGG gene cross-reference

ath:AT1G23480

ath:AT5G03760

ath:AT5G22740

dosa:Os02g0192500

dosa:Os06g0625700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.376

Rank 1 · LXL04_013123 · OH-1004

Golgi apparatus0.345

Rank 2 · LXL04_013123 · OH-1004

Cell membrane0.188

Rank 3 · LXL04_013123 · OH-1004

Cytoplasm0.104

Rank 4 · LXL04_013123 · OH-1004

Lysosome / Vacuole0.061

Rank 5 · LXL04_013123 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13641.13Glyco_tranf_2_3100-333 aa

PF00535.33Glycos_transf_2104-261 aa

PF13632.13Glyco_trans_2_3191-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013123	`PF13641.13`	Glyco_tranf_2_3	100	333	7.8e-16	59.2
LXL04_013123	`PF00535.33`	Glycos_transf_2	104	261	7.6e-11	42.9
LXL04_013123	`PF13632.13`	Glyco_trans_2_3	191	387	6.1e-24	85.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNI7`	Arabidopsis thaliana	Glucomannan 4-beta-mannosyltransferase 2	77.905%	Swiss-Prot	strong database homology
`Q9LZR3`	Arabidopsis thaliana	Glucomannan 4-beta-mannosyltransferase 9	71.673%	Swiss-Prot	strong database homology
`Q9LQC9`	Arabidopsis thaliana	Probable glucomannan 4-beta-mannosyltransferase 3	60.646%	Swiss-Prot	strong database homology
`Q67VS7`	Oryza sativa subsp. japonica	Probable glucomannan 4-beta-mannosyltransferase 9	68.665%	Swiss-Prot	strong database homology
`Q7PC76`	Oryza sativa subsp. japonica	Glucomannan 4-beta-mannosyltransferase 1	71.032%	Swiss-Prot	strong database homology

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