LXL04_013089 | RubberDandelionOmics

Gene overview

LXL04_013089

Reference: OH-1004 Chr: Chr03 Coordinates: 23758710-23760458 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1749 bp · LXL04_013089|LXL04_013089|OH1004|cDNA

ATGGGGGAAGCGCCCTCAACCACCACAGCCGGCACCGTTGCCGGAGGTGCCACAAGCCTGCCTTTTGTAGTCCATGTAGTCCGCGGCCGCTGGTTCTCTCTTTTCGCTTCTTTCTTAGTCATGACCGGCGCCGGAGCGACTTACCTCTTCGGCGTCTACTCCAAAGACATCAAATCCGCCCTTAGTTACGATCAAACCACCCTCAACCTCCTAGGCTTCTTTAAAGACCTTGGTGCGAACGTCGGTGTTCTTTCCGGCCT...

CDS

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1749 bp · LXL04_013089|LXL04_013089|OH1004|CDS

ATGGGGGAAGCGCCCTCAACCACCACAGCCGGCACCGTTGCCGGAGGTGCCACAAGCCTGCCTTTTGTAGTCCATGTAGTCCGCGGCCGCTGGTTCTCTCTTTTCGCTTCTTTCTTAGTCATGACCGGCGCCGGAGCGACTTACCTCTTCGGCGTCTACTCCAAAGACATCAAATCCGCCCTTAGTTACGATCAAACCACCCTCAACCTCCTAGGCTTCTTTAAAGACCTTGGTGCGAACGTCGGTGTTCTTTCCGGCCT...

Protein

Download Protein FASTA

582 aa · LXL04_013089|LXL04_013089|OH1004|PROTEIN

MGEAPSTTTAGTVAGGATSLPFVVHVVRGRWFSLFASFLVMTGAGATYLFGVYSKDIKSALSYDQTTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLILGSALNFGGYFMIWLAVSNRISKPKVWHMCIYICIGANSQNFANTGALVTTVRNFPESRGVVLGLLKGFTGLSGAIMTQIYLAIYGNDSQSLILLIAWLPAAISVVFVYTIRAMTVVRQPNELRIFYRFLCVSIFLALFLMGMTIAQNIVTFSARAYAGSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013089`
TK1151 ID	TkA02G518020
OH-1004 ID	LXL04_013089
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.400
Protein coverage (%)	TK1151 100.000 / OH-1004 93.127 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013089

Location Chr03:23758710-23760458 (-)

Description Similar to NFD4: Protein NUCLEAR FUSION DEFECTIVE 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31470`	Required for karyogamy during female gametophyte development, when the two polar nuclei fuse to form the diploid central cell nucleus.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013089 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000741 karyogamy Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G31470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.622

Rank 1 · LXL04_013089 · OH-1004

Lysosome / Vacuole0.172

Rank 2 · LXL04_013089 · OH-1004

Endoplasmic reticulum0.109

Rank 3 · LXL04_013089 · OH-1004

Cytoplasm0.084

Rank 4 · LXL04_013089 · OH-1004

Golgi apparatus0.053

Rank 5 · LXL04_013089 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_123-175 aa

PF06813.20Nodulin-like30-274 aa

PF07690.22MFS_1238-494 aa

PF23262.1NFD4_C354-565 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013089	`PF07690.22`	MFS_1	23	175	6.6e-13	49.0
LXL04_013089	`PF06813.20`	Nodulin-like	30	274	1.7e-91	306.9
LXL04_013089	`PF07690.22`	MFS_1	238	494	6.6e-13	49.0
LXL04_013089	`PF23262.1`	NFD4_C	354	565	5.8e-19	69.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I9E1`	Arabidopsis thaliana	Protein NUCLEAR FUSION DEFECTIVE 4	24.368%	Swiss-Prot	weak database homology

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