Gene Card
Gene overview
cDNA / CDS / Protein Sequences
753 bp · LXL04_013057|LXL04_013057|OH1004|cDNA
ATGCCGTTGAAATTTTGCAGTCTTGGTAATCTACCGTCTCAAAGTAAACCGGAAGAACAGCCAACTCCCGTAGATATGTTCAAGTTCTGGGGTTCTCAAGAACAAGCAGCCGATTCAAGGCCACAAGAAGTTTCTTCAAATTCATGGTATGCTCCATCTGTATCAAGCTCTTCTCGCCCCTCAACACCTAATACCAGCAATTCCATGCAAAGACCCGAAGATCAACCTCACTCCTTATCTCCTGTTTCCCCTACAGAGGC...
753 bp · LXL04_013057|LXL04_013057|OH1004|CDS
ATGCCGTTGAAATTTTGCAGTCTTGGTAATCTACCGTCTCAAAGTAAACCGGAAGAACAGCCAACTCCCGTAGATATGTTCAAGTTCTGGGGTTCTCAAGAACAAGCAGCCGATTCAAGGCCACAAGAAGTTTCTTCAAATTCATGGTATGCTCCATCTGTATCAAGCTCTTCTCGCCCCTCAACACCTAATACCAGCAATTCCATGCAAAGACCCGAAGATCAACCTCACTCCTTATCTCCTGTTTCCCCTACAGAGGC...
Protein
Download Protein FASTA250 aa · LXL04_013057|LXL04_013057|OH1004|PROTEIN
MPLKFCSLGNLPSQSKPEEQPTPVDMFKFWGSQEQAADSRPQEVSSNSWYAPSVSSSSRPSTPNTSNSMQRPEDQPHSLSPVSPTEAAAIIVYLQDKNADELRKLLSDKDAYQQFLLSIDLIKTTNNLRDELQNETLQLARENLAKESCMTELRNQCMIIRTTELATAQERLNELNKQKGEILRSYSPASLLHKLQELINKTDEESETLHKQLLEKEMDLGSFVQKYKKLRVDYHKRALTHLAATTSLSG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013057 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013057 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:23257587-23259187 (-) | |||||||||
| Description | Similar to VPS37-1: Vacuolar protein-sorting-associated protein 37 homolog 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006612 protein targeting to membrane Biological Process GO:0006623 protein targeting to vacuole Biological Process GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Biological Process GO:0000813 ESCRT I complex Cellular Component GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G36680 ath:AT3G53120 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07200.19Mod_r95-239 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013057 | PF07200.19 | Mod_r | 95 | 239 | 1e-34 | 120.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.