LXL04_013020 | RubberDandelionOmics

Gene overview

LXL04_013020

Reference: OH-1004 Chr: Chr03 Coordinates: 22432731-22435369 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1251 bp · LXL04_013020|LXL04_013020|OH1004|cDNA

ATGATGCACAGACTTGTGAGATCAAGGTCTATAGCGGCATTAGTATCAGCATCAAAACCTTCCTCCCAACATCGAGGCGGGGTTGCGGCGTTGTTTTCAACTTCTATGCTGTTCGATGATACCCAAATACAGTTCAAAGAAAGCGTTGCTCAATTTGCCCAAGAACATATTGCTCCTCATGCCTCAAAAATAGACACTGCAAATAATTTCCCACAGGAAGTCAACTTATGGAAACTAATGGGAGACTTCAATCTCCATGG...

CDS

Download CDS FASTA

1251 bp · LXL04_013020|LXL04_013020|OH1004|CDS

ATGATGCACAGACTTGTGAGATCAAGGTCTATAGCGGCATTAGTATCAGCATCAAAACCTTCCTCCCAACATCGAGGCGGGGTTGCGGCGTTGTTTTCAACTTCTATGCTGTTCGATGATACCCAAATACAGTTCAAAGAAAGCGTTGCTCAATTTGCCCAAGAACATATTGCTCCTCATGCCTCAAAAATAGACACTGCAAATAATTTCCCACAGGAAGTCAACTTATGGAAACTAATGGGAGACTTCAATCTCCATGG...

Protein

Download Protein FASTA

416 aa · LXL04_013020|LXL04_013020|OH1004|PROTEIN

MMHRLVRSRSIAALVSASKPSSQHRGGVAALFSTSMLFDDTQIQFKESVAQFAQEHIAPHASKIDTANNFPQEVNLWKLMGDFNLHGITAPVEYGGLGLGYLYHCIAMEEVSRASGSVGLSFGAHSNLCINQLVRNGNAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAERVEGGYVLNGNKMWCTNGPIAQTLVVYAKTDIAARSKGITAFIIEKGMAGFSTAQKLDKLGMRGSDTCELVFDNCFVPNENVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013020`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013020

Location Chr03:22432731-22435369 (+)

Description Similar to 2MBCD: 2-methylacyl-CoA dehydrogenase, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45300`	Involved in degradation of the branched-chain amino acids, phytol and lysine for the supply of carbon and electrons to the ETF/ETFQO complex during dark-induced sugar starvation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0125500`	Isovaleryl-CoA dehydrogenase, mitochondrial.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013020 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006552 L-leucine catabolic process Biological Process

GO:0009083 branched-chain amino acid catabolic process Biological Process

GO:0010230 alternative respiration Biological Process

GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase Biological Process

GO:1902190 2-methylbutanoyl-CoA(4-) catabolic process Biological Process

GO:1902192 2-methylbut-2-enoyl-CoA(4-) metabolic process Biological Process

GO:1902196 isovaleryl-CoA(4-) catabolic process Biological Process

GO:1902198 3-methylbut-2-enoyl-CoA(4-) metabolic process Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT3G45300

dosa:Os05g0125500

mmu:56357

sot:102589539

sot:102601763

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.899

Rank 1 · LXL04_013020 · OH-1004

Cytoplasm0.058

Rank 2 · LXL04_013020 · OH-1004

Nucleus0.029

Rank 3 · LXL04_013020 · OH-1004

Plastid0.027

Rank 4 · LXL04_013020 · OH-1004

Peroxisome0.019

Rank 5 · LXL04_013020 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02771.22Acyl-CoA_dh_N40-153 aa

PF02770.25Acyl-CoA_dh_M157-252 aa

PF00441.30Acyl-CoA_dh_1264-412 aa

PF08028.17Acyl-CoA_dh_2285-395 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013020	`PF02771.22`	Acyl-CoA_dh_N	40	153	2.5e-37	128.4
LXL04_013020	`PF02770.25`	Acyl-CoA_dh_M	157	252	9.2e-26	90.6
LXL04_013020	`PF00441.30`	Acyl-CoA_dh_1	264	412	1.4e-42	146.0
LXL04_013020	`PF08028.17`	Acyl-CoA_dh_2	285	395	4.5e-12	47.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SWG0`	Arabidopsis thaliana	Isovaleryl-CoA dehydrogenase, mitochondrial	85.185%	Swiss-Prot	strong database homology
`Q75IM9`	Oryza sativa subsp. japonica	Isovaleryl-CoA dehydrogenase, mitochondrial	84.896%	Swiss-Prot	strong database homology

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