LXL04_012930 | RubberDandelionOmics

Gene overview

LXL04_012930

Reference: OH-1004 Chr: Chr03 Coordinates: 21032783-21039159 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3639 bp · LXL04_012930|LXL04_012930|OH1004|cDNA

ATGGAGAAgctttttttgtgttttttcacaattttggtgatATGTTCATGGGCTATCATGGCTGAATCAGATATAAAATACAAAGACCCCAAACAACCGTTAGGTGTTCGAATAAGGGATTTGATGAATCGAATGACATTGGAAGAAAAAATCGGTCAAATGACACAGATTGATAGCAGGGTAGCTACACGAGAAGTACTCCAAAATTACTCCATAGGGAGCTTATTGACCAATGCAGCGAGCCCTTCATCACTGGACCC...

CDS

Download CDS FASTA

3639 bp · LXL04_012930|LXL04_012930|OH1004|CDS

ATGGAGAAGCTTTTTTTGTGTTTTTTCACAATTTTGGTGATATGTTCATGGGCTATCATGGCTGAATCAGATATAAAATACAAAGACCCCAAACAACCGTTAGGTGTTCGAATAAGGGATTTGATGAATCGAATGACATTGGAAGAAAAAATCGGTCAAATGACACAGATTGATAGCAGGGTAGCTACACGAGAAGTACTCCAAAATTACTCCATAGGGAGCTTATTGACCAATGCAGCGAGCCCTTCATCACTGGACCC...

Protein

Download Protein FASTA

1212 aa · LXL04_012930|LXL04_012930|OH1004|PROTEIN

MEKLFLCFFTILVICSWAIMAESDIKYKDPKQPLGVRIRDLMNRMTLEEKIGQMTQIDSRVATREVLQNYSIGSLLTNAASPSSLDPTSPQGWINMVNNFQRDSLSSRLGIPLMYGIDAVHGNSRVVNATIFPQNIGLGKIGAATALEVRATGVNYAFAPCVAVCRDPRWGRCFESFSEDPKIVRAMTEIIPGLQGEIPRNGRLGVPFVGGQEKVAACAKHYVGDGGTTRGINANNTLTSFHGLLSIHMPPYFDAVRKGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012930`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_012930`
Location	Chr03:21032783-21039159 (+)
Description	Similar to BACOVA_02659: Beta-glucosidase BoGH3B (Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012930` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0009251 glucan catabolic process Biological Process GO:0042742 defense response to bacterium Biological Process GO:0085030 symbiotic process benefiting host Biological Process GO:2000899 xyloglucan catabolic process Biological Process GO:0005764 lysosome Cellular Component GO:0008422 beta-glucosidase activity Molecular Function
KEGG gene cross-reference	ddi:DDB_G0292810 stm:STM2166 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.640

Rank 1 · LXL04_012930 · OH-1004

Lysosome / Vacuole0.157

Rank 2 · LXL04_012930 · OH-1004

Cytoplasm0.114

Rank 3 · LXL04_012930 · OH-1004

Cell membrane0.080

Rank 4 · LXL04_012930 · OH-1004

Endoplasmic reticulum0.057

Rank 5 · LXL04_012930 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00933.28Glyco_hydro_346-366 aa

PF01915.28Glyco_hydro_3_C403-593 aa

PF00933.28Glyco_hydro_3642-961 aa

PF01915.28Glyco_hydro_3_C998-1206 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012930	`PF00933.28`	Glyco_hydro_3	46	366	1.9e-121	406.1
LXL04_012930	`PF01915.28`	Glyco_hydro_3_C	403	593	1.6e-70	237.9
LXL04_012930	`PF00933.28`	Glyco_hydro_3	642	961	1.9e-121	406.1
LXL04_012930	`PF01915.28`	Glyco_hydro_3_C	998	1206	1.6e-70	237.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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