LXL04_012891 | RubberDandelionOmics

Gene overview

LXL04_012891

Reference: OH-1004 Chr: Chr03 Coordinates: 20455819-20456770 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

480 bp · LXL04_012891|LXL04_012891|OH1004|cDNA

atgagttTCAGTGAGAAGCAAGAAGCATTGGTGAAGGAAGCATGGGAGATAATGAAGGAAGACATTCCTGCTCTTAGTCTCTACTTCTTTACACAGGTACTGGAGATAGCACCTGCCGCAAAGGGATTGTTTTCATTTCTGAAAGACGCAGAAGAAATCCCAGAAAATAACCCCAAGCTCAAGGCCCATGCTATTAAAGTTTTCAAAATGACATGCGAAGCAGCGATTCAGCTGAGAGAGAAAGGAGAGGTTGTGGTTTC...

CDS

Download CDS FASTA

480 bp · LXL04_012891|LXL04_012891|OH1004|CDS

ATGAGTTTCAGTGAGAAGCAAGAAGCATTGGTGAAGGAAGCATGGGAGATAATGAAGGAAGACATTCCTGCTCTTAGTCTCTACTTCTTTACACAGGTACTGGAGATAGCACCTGCCGCAAAGGGATTGTTTTCATTTCTGAAAGACGCAGAAGAAATCCCAGAAAATAACCCCAAGCTCAAGGCCCATGCTATTAAAGTTTTCAAAATGACATGCGAAGCAGCGATTCAGCTGAGAGAGAAAGGAGAGGTTGTGGTTTC...

Protein

Download Protein FASTA

159 aa · LXL04_012891|LXL04_012891|OH1004|PROTEIN

MSFSEKQEALVKEAWEIMKEDIPALSLYFFTQVLEIAPAAKGLFSFLKDAEEIPENNPKLKAHAIKVFKMTCEAAIQLREKGEVVVSDSTLKYLGSVHVQKGVVEPHFAVVKEGVLRTVEKGVGEKWNEEMKEAWSEAYDQLAAAILAEMNKEIAETQL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012891`
TK1151 ID	TkA02G531850
OH-1004 ID	LXL04_012891
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012891

Location Chr03:20455819-20456770 (+)

Description Similar to HB2: Non-symbiotic hemoglobin 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10520`	Phytoglobin that reduces nitrite to nitric oxide (NO) under anoxic conditions (e.g. during flooding or in waterlogged soil) (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012891 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006631 fatty acid metabolic process Biological Process

GO:0019432 triglyceride biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005344 oxygen carrier activity Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0019825 oxygen binding Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G10520

sly:543822

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.653

Rank 1 · LXL04_012891 · OH-1004

Cell membrane0.183

Rank 2 · LXL04_012891 · OH-1004

Nucleus0.166

Rank 3 · LXL04_012891 · OH-1004

Mitochondrion0.111

Rank 4 · LXL04_012891 · OH-1004

Endoplasmic reticulum0.110

Rank 5 · LXL04_012891 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00042.29Globin29-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012891	`PF00042.29`	Globin	29	146	9.8e-22	78.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O24521`	Arabidopsis thaliana	Anaerobic nitrite reductase AHB2	69.281%	Swiss-Prot	strong database homology

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