LXL04_012888 | RubberDandelionOmics

Gene overview

LXL04_012888

Reference: OH-1004 Chr: Chr03 Coordinates: 20433034-20435801 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

459 bp · LXL04_012888|LXL04_012888|OH1004|cDNA

ATGGGAAAGGTGGTCACTAAAAAATTGGTCACTAATGAACACTTTTCTTGTAGTGGATGTAAGCCGTGGATCTTCATACCAGATCGCAGGATTACAGAGATCTGTATACGAAGTGGAAACTTTATAGATTCAATAAGGTTCACTTACATAGACCATGACCACCTCCAAAAACATTCTGAAACATACGGTGGTGATGGTGGCACACCTCATAACATTAGCTTTGCATATGATGAGTACATCACGGAGATTTGCGGAACTGT...

CDS

Download CDS FASTA

459 bp · LXL04_012888|LXL04_012888|OH1004|CDS

ATGGGAAAGGTGGTCACTAAAAAATTGGTCACTAATGAACACTTTTCTTGTAGTGGATGTAAGCCGTGGATCTTCATACCAGATCGCAGGATTACAGAGATCTGTATACGAAGTGGAAACTTTATAGATTCAATAAGGTTCACTTACATAGACCATGACCACCTCCAAAAACATTCTGAAACATACGGTGGTGATGGTGGCACACCTCATAACATTAGCTTTGCATATGATGAGTACATCACGGAGATTTGCGGAACTGT...

Protein

Download Protein FASTA

152 aa · LXL04_012888|LXL04_012888|OH1004|PROTEIN

MGKVVTKKLVTNEHFSCSGCKPWIFIPDRRITEICIRSGNFIDSIRFTYIDHDHLQKHSETYGGDGGTPHNISFAYDEYITEICGTVGVFLGMNVVTSISFGTNNGPYGSYGKHEGSSFSFQVTQGKFVGFCGISGRFLNSIGSPFLPYYSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012888`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012888

Location Chr03:20433034-20435801 (-)

Description Similar to Horcolin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19715`	Jacalin-related lectin 3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012888 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005536 D-glucose binding Molecular Function

GO:0005537 D-mannose binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G19715

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.678

Rank 1 · LXL04_012888 · OH-1004

Nucleus0.329

Rank 2 · LXL04_012888 · OH-1004

Extracellular0.114

Rank 3 · LXL04_012888 · OH-1004

Cell membrane0.051

Rank 4 · LXL04_012888 · OH-1004

Endoplasmic reticulum0.050

Rank 5 · LXL04_012888 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01419.23Jacalin29-143 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012888	`PF01419.23`	Jacalin	29	143	2.2e-28	100.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HQX1`	Arabidopsis thaliana	Jacalin-related lectin 3	46.512%	Swiss-Prot	moderate database homology

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