Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1233 bp · LXL04_012886|LXL04_012886|OH1004|cDNA
ATGGCAGTAACACCATATCATGCGACTACTTCAATGTCTTCTTATACGCCACCTAACCGCTTCACATCGGTATCACGAGCCGGGTTTTCGCATCCAACCCCTTTCAATCCATATAAGCTCGACGCAATCTTCAGTTCTGGTCGTCTCTCACTTTCTTCGAAAAGAAAACAGCCAAGAAATTCGCTTAAAGTGAAATCAGCCGTAGCTCCTATTGAAACCACAGCGGATTTTGATGAAATGGTTTCTGGGACTCAAAGAAA...
1233 bp · LXL04_012886|LXL04_012886|OH1004|CDS
ATGGCAGTAACACCATATCATGCGACTACTTCAATGTCTTCTTATACGCCACCTAACCGCTTCACATCGGTATCACGAGCCGGGTTTTCGCATCCAACCCCTTTCAATCCATATAAGCTCGACGCAATCTTCAGTTCTGGTCGTCTCTCACTTTCTTCGAAAAGAAAACAGCCAAGAAATTCGCTTAAAGTGAAATCAGCCGTAGCTCCTATTGAAACCACAGCGGATTTTGATGAAATGGTTTCTGGGACTCAAAGAAA...
Protein
Download Protein FASTA410 aa · LXL04_012886|LXL04_012886|OH1004|PROTEIN
MAVTPYHATTSMSSYTPPNRFTSVSRAGFSHPTPFNPYKLDAIFSSGRLSLSSKRKQPRNSLKVKSAVAPIETTADFDEMVSGTQRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGTLVPVEGPIAPLFALEINPEKAREEFRDVSKTNGGTGVKDFMDGMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVIQFLESQEYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012886 |
|---|---|
| TK1151 ID | TkA02G532490 |
| OH-1004 ID | LXL04_012886 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012886 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:20407404-20409767 (+) | |||||||||
| Description | Similar to GET3B: ATPase GET3B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0071816 tail-anchored membrane protein insertion into ER membrane Biological Process GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0043529 GET complex Cellular Component GO:0005524 ATP binding Molecular Function GO:0015446 ATPase-coupled arsenite transmembrane transporter activity Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G10350 ath:AT5G60730 mth:MTH_1511 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF10609.16ParA86-120 aaPF02374.22ArsA_ATPase87-408 aaPF01656.30CbiA91-307 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012886 | PF10609.16 | ParA | 86 | 120 | 6.2e-07 | 29.8 |
| LXL04_012886 | PF02374.22 | ArsA_ATPase | 87 | 408 | 2.4e-72 | 244.5 |
| LXL04_012886 | PF01656.30 | CbiA | 91 | 307 | 2.1e-08 | 34.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.