LXL04_012792 | RubberDandelionOmics

Gene overview

LXL04_012792

Reference: OH-1004 Chr: Chr03 Coordinates: 18960286-18961293 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · LXL04_012792|LXL04_012792|OH1004|cDNA

ATGTGGAAAACAGCTTTGGCGCGCGCCACCGGTGCTCTTCGGTCGCCGTTGCAGGAAATTATCAGTACACCTTTCCGCAGCCACTACTCCTCCAGCAGCAAGTCATCCTCTGCCGTTGTTAACTCCATGATTCTCCGTTCTCTTAAAGAACACTACACCGAAGTCTCCAAAATGGCTCCTCCCCCTAAGGTGAGTCCTCCTTCACCATATACAGTGGTGAAAGGGGCACTCGAGAGTGGCGGCCCTGTTCTGAAGCGAAC...

CDS

Download CDS FASTA

693 bp · LXL04_012792|LXL04_012792|OH1004|CDS

ATGTGGAAAACAGCTTTGGCGCGCGCCACCGGTGCTCTTCGGTCGCCGTTGCAGGAAATTATCAGTACACCTTTCCGCAGCCACTACTCCTCCAGCAGCAAGTCATCCTCTGCCGTTGTTAACTCCATGATTCTCCGTTCTCTTAAAGAACACTACACCGAAGTCTCCAAAATGGCTCCTCCCCCTAAGGTGAGTCCTCCTTCACCATATACAGTGGTGAAAGGGGCACTCGAGAGTGGCGGCCCTGTTCTGAAGCGAAC...

Protein

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230 aa · LXL04_012792|LXL04_012792|OH1004|PROTEIN

MWKTALARATGALRSPLQEIISTPFRSHYSSSSKSSSAVVNSMILRSLKEHYTEVSKMAPPPKVSPPSPYTVVKGALESGGPVLKRTYGDEEISISVMRMINILPGVDPADLDSEDEINQLFLHADISKPGQDFVLHFLCGLYPDALGIHSVSLRHKGETSGLLEVPSKYNGPDFEALDDRMRDAFHGYIEERGINDTLFPFLQAWLYVKDHRSLMHWFKSVGTCVKKTN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012792`
TK1151 ID	TkA02G537970
OH-1004 ID	LXL04_012792
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012792

Location Chr03:18960286-18961293 (+)

Description Similar to At2g39795: Uncharacterized protein At2g39795, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39795`	Uncharacterized protein At2g39795, mitochondrial.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012792 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0042256 cytosolic ribosome assembly Biological Process

GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT2G39795

spo:2541189

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.829

Rank 1 · LXL04_012792 · OH-1004

Nucleus0.133

Rank 2 · LXL04_012792 · OH-1004

Plastid0.098

Rank 3 · LXL04_012792 · OH-1004

Cytoplasm0.054

Rank 4 · LXL04_012792 · OH-1004

Cell membrane0.017

Rank 5 · LXL04_012792 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02330.22MAM3383-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012792	`PF02330.22`	MAM33	83	223	5.7e-19	69.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W487`	Arabidopsis thaliana	Uncharacterized protein At2g39795, mitochondrial	32.584%	Swiss-Prot	weak database homology

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