Gene Card
Gene overview
cDNA / CDS / Protein Sequences
804 bp · LXL04_012785|LXL04_012785|OH1004|cDNA
ATGGCGATTACCTTGTTCTTATTTCCATCACCACCTTCCTTGTTCGTCAATTCAATGTCGATTTTAAACTTGTTGGCTCTCATTGGTGGGGGTTACATGGAACTGATAGGCAAAAACAAGCAGTACGCCAAGTTTTATAATCCCTCTGCTTCAAACACATCAAACGAGAAGGAAAAGAGTAAGCTTTCCAGTAGAATCGGAATGCTTGTGTTCTATACACCATCGTTCTTCTTGGGTGTTGCCTCTTTTTCTGTTTTTCG...
804 bp · LXL04_012785|LXL04_012785|OH1004|CDS
ATGGCGATTACCTTGTTCTTATTTCCATCACCACCTTCCTTGTTCGTCAATTCAATGTCGATTTTAAACTTGTTGGCTCTCATTGGTGGGGGTTACATGGAACTGATAGGCAAAAACAAGCAGTACGCCAAGTTTTATAATCCCTCTGCTTCAAACACATCAAACGAGAAGGAAAAGAGTAAGCTTTCCAGTAGAATCGGAATGCTTGTGTTCTATACACCATCGTTCTTCTTGGGTGTTGCCTCTTTTTCTGTTTTTCG...
Protein
Download Protein FASTA267 aa · LXL04_012785|LXL04_012785|OH1004|PROTEIN
MAITLFLFPSPPSLFVNSMSILNLLALIGGGYMELIGKNKQYAKFYNPSASNTSNEKEKSKLSSRIGMLVFYTPSFFLGVASFSVFRLQDLRFLMAISVLTFHFFKRIFEVLFVHKFSGSMMVDDAITIGLSYFVSTATMIYAQYLSQESPEPAYDLKYVGLAMFLTGISGNFYHHYILSSLRRKGDREYKVPKGGLFDLVICPHYLFEIIEFVGVTCIYQTGFTFCFTLGTVFLLMGRSYATRKWYVTKFGGKFGKNVK...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012785 |
|---|---|
| TK1151 ID | TkA02G539090 |
| OH-1004 ID | LXL04_012785 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 85.000 / OH-1004 38.202Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012785 |
|---|---|
| Location | Chr03:18724846-18725812 (+) |
| Description | Similar to gpsn2: Very-long-chain enoyl-CoA reductase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006665 sphingolipid metabolic process Biological Process GO:0006694 steroid biosynthetic process Biological Process GO:0016132 brassinosteroid biosynthetic process Biological Process GO:0030497 fatty acid elongation Biological Process GO:0042761 very long-chain fatty acid biosynthetic process Biological Process GO:0090377 seed trichome initiation Biological Process GO:0090378 seed trichome elongation Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0016491 oxidoreductase activity Molecular Function GO:0047751 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity Molecular Function |
| KEGG gene cross-reference | bdi:100827766 cel:CELE_C15F1.6 ddi:DDB_G0270270 ghi:107948867 sly:543801 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02544.22Steroid_dh134-267 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012785 | PF02544.22 | Steroid_dh | 134 | 267 | 4.2e-25 | 89.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.