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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_012783
Reference: OH-1004 Chr: Chr03 Coordinates: 18712632-18715837 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2613 bp · LXL04_012783|LXL04_012783|OH1004|cDNA

ATGACGATTTCATTGTTCCAAACGCTCTTATATCCACCACCATCTTCCTTGTTCGTCAATGTAATGTCGATATTAAGTTGTTTGTCGCTCTCAAATGGTGGTTACATGGAAACAAAAGGCAAACACATGCAGTATTCCAAGTTCTTCAATGTCGTAGCTTCAAAGAAAGCCAAGGTTCAGGAGACCATGGTGGGTAGTAGAATCGGGATGCTTTTATTCTATACACCAGCGTTCTTTGTGGGTCTTGGCTCTTTCGCCAT...

CDS

Download CDS FASTA

2613 bp · LXL04_012783|LXL04_012783|OH1004|CDS

ATGACGATTTCATTGTTCCAAACGCTCTTATATCCACCACCATCTTCCTTGTTCGTCAATGTAATGTCGATATTAAGTTGTTTGTCGCTCTCAAATGGTGGTTACATGGAAACAAAAGGCAAACACATGCAGTATTCCAAGTTCTTCAATGTCGTAGCTTCAAAGAAAGCCAAGGTTCAGGAGACCATGGTGGGTAGTAGAATCGGGATGCTTTTATTCTATACACCAGCGTTCTTTGTGGGTCTTGGCTCTTTCGCCAT...

Protein

Download Protein FASTA

870 aa · LXL04_012783|LXL04_012783|OH1004|PROTEIN

MTISLFQTLLYPPPSSLFVNVMSILSCLSLSNGGYMETKGKHMQYSKFFNVVASKKAKVQETMVGSRIGMLLFYTPAFFVGLGSFAIFSDRDLRFTILISVLTIHFLKRVLEVLFVHKYSGSMALEATITISLSYTISTLTMIYAQYLSHEHSKPTIDLKNVGTVLFFVGIVGNFYHHHILSNLRTKDDRGYKIPKGGLFGLVICPHYLFEIIEFIGVSCIAQTTYVFAFSLGTMFYLMGRSYATRQWYISEFGDKFGDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_012783
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_012783
LocationChr03:18712632-18715837 (+)
DescriptionSimilar to At1g12700: Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g12700 Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial. No verified direct reference in this release
At1g12775 Pentatricopeptide repeat-containing protein At1g12775, mitochondrial. No verified direct reference in this release
At1g12300 Pentatricopeptide repeat-containing protein At1g12300, mitochondrial. No verified direct reference in this release
At1g62930 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012783 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G12700
ath:AT1G12775
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.529
Rank 1 · LXL04_012783 · OH-1004
Plastid0.241
Rank 2 · LXL04_012783 · OH-1004
Endoplasmic reticulum0.095
Rank 3 · LXL04_012783 · OH-1004
Cytoplasm0.031
Rank 4 · LXL04_012783 · OH-1004
Nucleus0.026
Rank 5 · LXL04_012783 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02544.22Steroid_dh140-267 aa
PF13041.13PPR_2380-427 aa
PF29070.1MSC6_N393-611 aa
PF23276.3TPR_24398-512 aa
PF13041.13PPR_2416-464 aa
PF23276.3TPR_24435-547 aa
PF13812.13PPR_3439-495 aa
PF12854.14PPR_1447-479 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_012783PF02544.22Steroid_dh1402675.8e-2485.5
LXL04_012783PF13041.13PPR_23804271.1e-135442.3
LXL04_012783PF29070.1MSC6_N3936112.9e-2796.5
LXL04_012783PF23276.3TPR_243985124.5e-31108.2
LXL04_012783PF13041.13PPR_24164641.1e-135442.3
LXL04_012783PF23276.3TPR_244355474.5e-31108.2
LXL04_012783PF13812.13PPR_34394952.6e-48162.7
LXL04_012783PF12854.14PPR_14474794.6e-118385.3
LXL04_012783PF13041.13PPR_24504841.1e-135442.3
LXL04_012783PF01535.27PPR4534823.3e-93300.4
LXL04_012783PF12854.14PPR_14885124.6e-118385.3
LXL04_012783PF17177.11PPR_long4906309.1e-30104.3
LXL04_012783PF12854.14PPR_15185464.6e-118385.3
LXL04_012783PF13041.13PPR_25205641.1e-135442.3
LXL04_012783PF12854.14PPR_15505794.6e-118385.3
LXL04_012783PF13041.13PPR_25515991.1e-135442.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C7Q7Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g12700, mitochondrial38.828%Swiss-Protmoderate database homology
Q9LPX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12775, mitochondrial38.070%Swiss-Protmoderate database homology
Q0WKV3Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g12300, mitochondrial38.475%Swiss-Protmoderate database homology
Q9LQ14Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62930, chloroplastic39.646%Swiss-Protmoderate database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262037.782%Swiss-Protmoderate database homology

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