Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3633 bp · LXL04_012734|LXL04_012734|OH1004|cDNA
ATGTTTTATTCGCAGTTCATATTAGCAAAAAAGGGTCCTCTAGGGACAATATGGATAGCAGCACATCTAGAGAGGAAGCTCCGCAAGAATCAAGTTGCAGATACTGATATCGGCTTCTCTGTAGACTCGATTCTCTTCCCTGAAATGCCAATTGCACTCCGGTTATCCAGCCATCTTTTACTTGGTGTCGTTAGGATATACTCAAGAAAGGTAAATTACCTATTCGATGATTGCAGTGAAGCTTTACTTAAAGTAAAACA...
3633 bp · LXL04_012734|LXL04_012734|OH1004|CDS
ATGTTTTATTCGCAGTTCATATTAGCAAAAAAGGGTCCTCTAGGGACAATATGGATAGCAGCACATCTAGAGAGGAAGCTCCGCAAGAATCAAGTTGCAGATACTGATATCGGCTTCTCTGTAGACTCGATTCTCTTCCCTGAAATGCCAATTGCACTCCGGTTATCCAGCCATCTTTTACTTGGTGTCGTTAGGATATACTCAAGAAAGGTAAATTACCTATTCGATGATTGCAGTGAAGCTTTACTTAAAGTAAAACA...
Protein
Download Protein FASTA1210 aa · LXL04_012734|LXL04_012734|OH1004|PROTEIN
MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGFSVDSILFPEMPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVDLPPEESTAPYHSITLPETFDLDDFELPGSEIYQGNYVDHHVSSKEQITLQDTMEGVVYSTSNFGLDERFGDGDACGLDLDEELMVEKAEHAIETSNSEAMPVPAGNIVNNQQIEEYDGENEPIEYAHAPCTPGLWEEPNLSNIQETSAYDDHQEPENHTITESAV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_012734 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_012734 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:17966949-17971771 (-) | |||||||||
| Description | Similar to SYN4: Sister chromatid cohesion 1 protein 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000278 mitotic cell cycle Biological Process GO:0006302 double-strand break repair Biological Process GO:0007059 chromosome segregation Biological Process GO:0007062 sister chromatid cohesion Biological Process GO:0009555 pollen development Biological Process GO:0009561 megagametogenesis Biological Process GO:0051301 cell division Biological Process GO:0070601 centromeric sister chromatid cohesion Biological Process GO:1990414 replication-born double-strand break repair via sister chromatid exchange Biological Process GO:0000775 chromosome, centromeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005730 nucleolus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G59550 ath:AT5G16270 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04825.19Rad21_Rec8_N1-101 aaPF04824.22Rad21_Rec81155-1201 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_012734 | PF04825.19 | Rad21_Rec8_N | 1 | 101 | 1.8e-38 | 131.7 |
| LXL04_012734 | PF04824.22 | Rad21_Rec8 | 1155 | 1201 | 1.1e-19 | 70.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.