LXL04_012731 | RubberDandelionOmics

Gene overview

LXL04_012731

Reference: OH-1004 Chr: Chr03 Coordinates: 17937542-17938202 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · LXL04_012731|LXL04_012731|OH1004|cDNA

ATGGCGTCGTCTTCGAATTCGCCTTGTGCGGCGTCCAGCAACGTCACGAAGCTTCTGAACGAGCTGAACCCCCACCAACGAGAAGATGCGGTGAACACGCTAGCTTACGAGGCTGAAATGCGCCTCCGTGATCCTGTTTATGGCTGCGTGGGAGTCATTTCTCTGCTCCAACACCAGCTCCGACAGCTTCAGATCGATCTCACCTCCGCGAAATCCGAGCTATCGAAGTACCAGAACCACCGTCTTTCCCTTATGAACGG...

CDS

Download CDS FASTA

552 bp · LXL04_012731|LXL04_012731|OH1004|CDS

ATGGCGTCGTCTTCGAATTCGCCTTGTGCGGCGTCCAGCAACGTCACGAAGCTTCTGAACGAGCTGAACCCCCACCAACGAGAAGATGCGGTGAACACGCTAGCTTACGAGGCTGAAATGCGCCTCCGTGATCCTGTTTATGGCTGCGTGGGAGTCATTTCTCTGCTCCAACACCAGCTCCGACAGCTTCAGATCGATCTCACCTCCGCGAAATCCGAGCTATCGAAGTACCAGAACCACCGTCTTTCCCTTATGAACGG...

Protein

Download Protein FASTA

183 aa · LXL04_012731|LXL04_012731|OH1004|PROTEIN

MASSSNSPCAASSNVTKLLNELNPHQREDAVNTLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQIDLTSAKSELSKYQNHRLSLMNGGAAHGLIAPAAVTTHHHQHDLGINLIVGGGDVISQDHLYGHHPAEFFPRRDQHTAAIDVKCTYDATGGGLGQHMQYQQHRAAGSGGDDRRTTIDPS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012731`
TK1151 ID	TkA02G541140
OH-1004 ID	LXL04_012731
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	83.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012731

Location Chr03:17937542-17938202 (-)

Description Similar to AS2: Protein ASYMMETRIC LEAVES 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65620`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0889400`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release
`UniProt: A2WXT0`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012731 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009943 adaxial/abaxial axis specification Biological Process

GO:0009944 polarity specification of adaxial/abaxial axis Biological Process

GO:0009954 proximal/distal pattern formation Biological Process

GO:0048441 petal development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0001216 DNA-binding transcription activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G65620

dosa:Os01g0889400

zma:100037816

zma:732739

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.937

Rank 1 · LXL04_012731 · OH-1004

Cytoplasm0.149

Rank 2 · LXL04_012731 · OH-1004

Cell membrane0.032

Rank 3 · LXL04_012731 · OH-1004

Endoplasmic reticulum0.025

Rank 4 · LXL04_012731 · OH-1004

Plastid0.009

Rank 5 · LXL04_012731 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195.20LOB12-71 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012731	`PF03195.20`	LOB	12	71	1.3e-17	64.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04479`	Arabidopsis thaliana	Protein ASYMMETRIC LEAVES 2	57.062%	Swiss-Prot	strong database homology
`Q8LQH4`	Oryza sativa subsp. japonica	LOB domain-containing protein 6	79.104%	Swiss-Prot	weak database homology
`A2WXT0`	Oryza sativa subsp. indica	LOB domain-containing protein 6	79.104%	Swiss-Prot	weak database homology

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