LXL04_012607 | RubberDandelionOmics

Gene overview

LXL04_012607

Reference: OH-1004 Chr: Chr03 Coordinates: 15474176-15479012 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1896 bp · LXL04_012607|LXL04_012607|OH1004|cDNA

ATGGCGTTTTCATCGGCTTTTCGTCGCATCCTCAGCGGACCATCTTCGATTATGAACTCTCAGTTAGCTGCAGCTCGATTCAGCTCAACTTTAACTGCCCCGAAGCTATTTATAAGCGGCCTAAACAGAAATACAACCGACGAAAAACTTCAAGAAGCATTTGCCCCGTTTGGCCAGCTTGTTGAAGCAAAAGTGATAATGGATAGAGCGACTCAAAGATCAAAGGGGTTTGCATTTGTGACATATGCATCAATAGAAGA...

CDS

Download CDS FASTA

1896 bp · LXL04_012607|LXL04_012607|OH1004|CDS

ATGGCGTTTTCATCGGCTTTTCGTCGCATCCTCAGCGGACCATCTTCGATTATGAACTCTCAGTTAGCTGCAGCTCGATTCAGCTCAACTTTAACTGCCCCGAAGCTATTTATAAGCGGCCTAAACAGAAATACAACCGACGAAAAACTTCAAGAAGCATTTGCCCCGTTTGGCCAGCTTGTTGAAGCAAAAGTGATAATGGATAGAGCGACTCAAAGATCAAAGGGGTTTGCATTTGTGACATATGCATCAATAGAAGA...

Protein

Download Protein FASTA

631 aa · LXL04_012607|LXL04_012607|OH1004|PROTEIN

MAFSSAFRRILSGPSSIMNSQLAAARFSSTLTAPKLFISGLNRNTTDEKLQEAFAPFGQLVEAKVIMDRATQRSKGFAFVTYASIEEAEKARAEMNAKFLDGWVIFVDPAKPREYKPLQPEPQQSSEFGFRTNKTIVIHPGVSFFPFPPAYRPERLLSCFQSQKVQILVRNNVIMCSSPICFGQALRIQYSKGSFASPKRNFRVFAMTSDVKEASNFISAAPIFLPEGPWKQIPGGVTAAEGFKAAGMYGGLRALGQKPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012607`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012607

Location Chr03:15474176-15479012 (+)

Description Similar to VITISV_037692: Arginine biosynthesis bifunctional protein ArgJ, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37500`	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012607 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006526 L-arginine biosynthetic process Biological Process

GO:0006592 ornithine biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004042 L-glutamate N-acetyltransferase activity Molecular Function

GO:0004358 L-glutamate N-acetyltransferase activity, acting on acetyl-L-ornithine as donor Molecular Function

KEGG gene cross-reference

ath:AT2G37500

rcu:8269377

sbi:8081475

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.887

Rank 1 · LXL04_012607 · OH-1004

Mitochondrion0.183

Rank 2 · LXL04_012607 · OH-1004

Cytoplasm0.051

Rank 3 · LXL04_012607 · OH-1004

Nucleus0.023

Rank 4 · LXL04_012607 · OH-1004

Peroxisome0.022

Rank 5 · LXL04_012607 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_136-102 aa

PF01960.24ArgJ245-631 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012607	`PF00076.29`	RRM_1	36	102	5.7e-20	71.7
LXL04_012607	`PF01960.24`	ArgJ	245	631	3.2e-128	428.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUR7`	Arabidopsis thaliana	Arginine biosynthesis bifunctional protein ArgJ, chloroplastic	72.768%	Swiss-Prot	moderate database homology

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