LXL04_012573 | RubberDandelionOmics

Gene overview

LXL04_012573

Reference: OH-1004 Chr: Chr03 Coordinates: 14843523-14846189 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1653 bp · LXL04_012573|LXL04_012573|OH1004|cDNA

ATGAAGAATTCAGTATCAGATCATGCCTTTTTCATCGAGAGTGATGATGAAGACGAAGACAAGGACTCCATTAGAGGTGATGATGATGGGAATGATTCGGACATCTCAAATTATTCCGACGAAAACCCTCACCATCAGATCAAACCTAGTTCCTTAAATCCGTCGTGGCCTCAAAGTTACAGGCAATCGATAGATCTTTACAGCAGCGTACCATCTCCAAGCCTGAACTTTCTGGGAACTCCTAACTTGTCTCGATTAGG...

CDS

Download CDS FASTA

1653 bp · LXL04_012573|LXL04_012573|OH1004|CDS

ATGAAGAATTCAGTATCAGATCATGCCTTTTTCATCGAGAGTGATGATGAAGACGAAGACAAGGACTCCATTAGAGGTGATGATGATGGGAATGATTCGGACATCTCAAATTATTCCGACGAAAACCCTCACCATCAGATCAAACCTAGTTCCTTAAATCCGTCGTGGCCTCAAAGTTACAGGCAATCGATAGATCTTTACAGCAGCGTACCATCTCCAAGCCTGAACTTTCTGGGAACTCCTAACTTGTCTCGATTAGG...

Protein

Download Protein FASTA

550 aa · LXL04_012573|LXL04_012573|OH1004|PROTEIN

MKNSVSDHAFFIESDDEDEDKDSIRGDDDGNDSDISNYSDENPHHQIKPSSLNPSWPQSYRQSIDLYSSVPSPSLNFLGTPNLSRLGSSFLSSTLTRRHTPEILPTLTKPFLPTPTDTQQPQERRSSHSLLPPRGSSAKKLPHYQKSSKASHEIPLSRHSSYGQSVVNGINVLCGVGILSTPFAVKEGGWAGLSLLFIFGVLSFYTGILLRYCLDSQPGLETYPDIGQAAFGTVGRLIISIILYVELYACCVEYIILESD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012573`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012573

Location Chr03:14843523-14846189 (-)

Description Similar to AVT1C: Amino acid transporter AVT1C

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39130`	Amino acid transporter AVT1C.	No verified direct reference in this release
`At3g54830`	Amino acid transporter AVT1B.	No verified direct reference in this release
`At5g02180`	Amino acid transporter AVT1D.	No verified direct reference in this release
`At3g09340`	Amino acid transporter AVT1F.	No verified direct reference in this release
`At5g02170`	Amino acid transporter AVT1E.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012573 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0031090 organelle membrane Cellular Component

GO:0015171 amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G39130

ath:AT3G09340

ath:AT3G54830

ath:AT5G02170

ath:AT5G02180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.565

Rank 1 · LXL04_012573 · OH-1004

Cytoplasm0.178

Rank 2 · LXL04_012573 · OH-1004

Golgi apparatus0.151

Rank 3 · LXL04_012573 · OH-1004

Endoplasmic reticulum0.132

Rank 4 · LXL04_012573 · OH-1004

Cell membrane0.128

Rank 5 · LXL04_012573 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490.25Aa_trans159-541 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012573	`PF01490.25`	Aa_trans	159	541	3.9e-67	227.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IUW3`	Arabidopsis thaliana	Amino acid transporter AVT1C	70.236%	Swiss-Prot	strong database homology
`F4JE35`	Arabidopsis thaliana	Amino acid transporter AVT1B	65.336%	Swiss-Prot	strong database homology
`Q8GYS4`	Arabidopsis thaliana	Amino acid transporter AVT1D	49.627%	Swiss-Prot	moderate database homology
`F4IZW8`	Arabidopsis thaliana	Amino acid transporter AVT1F	48.423%	Swiss-Prot	moderate database homology
`Q8LPF4`	Arabidopsis thaliana	Amino acid transporter AVT1E	47.601%	Swiss-Prot	moderate database homology

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