LXL04_012564 | RubberDandelionOmics

Gene overview

LXL04_012564

Reference: OH-1004 Chr: Chr03 Coordinates: 14697160-14699709 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1545 bp · LXL04_012564|LXL04_012564|OH1004|cDNA

GCCCATAACTTGTTTCAGTCCAACATAAACATCATCGTCTTCAGACGACTTGGGTCAATTCTGCTGCTACTGAGAGAAAACGGTAGTGAACATGGAGGTTTTCGTAGCCAGATCCCGTTTAAACCTAATTCTGTTGCTCGTCTCCTTGATCTCCCTATGTTTCGGATCGTCTTCATCACTCTCATCGTCATCATCGGAGCTTCAGATCCTCACCGCTGAACGCAGAATTGATTTGGCTTCACACATCATTAGGGTCGTCT...

CDS

Download CDS FASTA

1425 bp · LXL04_012564|LXL04_012564|OH1004|CDS

ATGGAGGTTTTCGTAGCCAGATCCCGTTTAAACCTAATTCTGTTGCTCGTCTCCTTGATCTCCCTATGTTTCGGATCGTCTTCATCACTCTCATCGTCATCATCGGAGCTTCAGATCCTCACCGCTGAACGCAGAATTGATTTGGCTTCACACATCATTAGGGTCGTCTTGAATTTGAAGGTTCAAAATGATGGAGCATCCTCTGCTTCAAATGTTCTTCTTGCATTTCCACCACCACAAGTCAAGCATCTAGCACTAAT...

Protein

Download Protein FASTA

474 aa · LXL04_012564|LXL04_012564|OH1004|PROTEIN

MEVFVARSRLNLILLLVSLISLCFGSSSSLSSSSSELQILTAERRIDLASHIIRVVLNLKVQNDGASSASNVLLAFPPPQVKHLALIQAAELTGKKKKKAVHPLDVSPSNLADGPNGAKFFSISLKTPLTTGGSVSIEVSYILTQSLEPFPVEIAQSEPQLVLYRDSALILSPYVIKQQTTVIRTPSTKVESFTRVEPSSQIRTELKYGPYENQSPYSYTPILLHFENNNPFAVVEELEREIEISHWGNLQITEHYTLVH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012564`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012564

Location Chr03:14697160-14699709 (-)

Description Similar to OST1B: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01720`	Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release
`At1g76400`	Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0693000`	Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release
`Os05g0301500`	Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012564 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0008250 oligosaccharyltransferase complex Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

KEGG gene cross-reference

ath:AT1G76400

ath:AT2G01720

dosa:Os05g0301500

ssc:397606

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.805

Rank 1 · LXL04_012564 · OH-1004

Golgi apparatus0.136

Rank 2 · LXL04_012564 · OH-1004

Nucleus0.086

Rank 3 · LXL04_012564 · OH-1004

Cytoplasm0.084

Rank 4 · LXL04_012564 · OH-1004

Cell membrane0.052

Rank 5 · LXL04_012564 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04597.20Ribophorin_I39-465 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012564	`PF04597.20`	Ribophorin_I	39	465	6.4e-147	490.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUA0`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B	64.732%	Swiss-Prot	strong database homology
`Q9SFX3`	Arabidopsis thaliana	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A	51.020%	Swiss-Prot	strong database homology
`B9FDT1`	Oryza sativa subsp. japonica	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B	63.029%	Swiss-Prot	strong database homology
`Q0DJC5`	Oryza sativa subsp. japonica	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A	53.795%	Swiss-Prot	strong database homology

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