LXL04_012429 | RubberDandelionOmics

Gene overview

LXL04_012429

Reference: OH-1004 Chr: Chr03 Coordinates: 12151941-12155422 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1515 bp · LXL04_012429|LXL04_012429|OH1004|cDNA

ATGTCAGTAGTAGCCTACAATCAACTGGTTTTCAATCGGATCCCTGCTTCTCCTCGTTTTTGTTCTTTACACCAATCATCAATTAGCCCCTTCAGAGCTCTAGCATCCAGGCAATTATTAAGTAAAGGTCACAGAAGTTTTTTACCAGTACGACTTTCTACCACCGTTAGATGCGCAATGAAATCGTATAAACTCTCTGACCTTACAAAAACTGAGGTTGACAATCTCAAGGCTCGACCCCGAATCAATTTCTCTTCTAT...

CDS

Download CDS FASTA

1515 bp · LXL04_012429|LXL04_012429|OH1004|CDS

ATGTCAGTAGTAGCCTACAATCAACTGGTTTTCAATCGGATCCCTGCTTCTCCTCGTTTTTGTTCTTTACACCAATCATCAATTAGCCCCTTCAGAGCTCTAGCATCCAGGCAATTATTAAGTAAAGGTCACAGAAGTTTTTTACCAGTACGACTTTCTACCACCGTTAGATGCGCAATGAAATCGTATAAACTCTCTGACCTTACAAAAACTGAGGTTGACAATCTCAAGGCTCGACCCCGAATCAATTTCTCTTCTAT...

Protein

Download Protein FASTA

504 aa · LXL04_012429|LXL04_012429|OH1004|PROTEIN

MSVVAYNQLVFNRIPASPRFCSLHQSSISPFRALASRQLLSKGHRSFLPVRLSTTVRCAMKSYKLSDLTKTEVDNLKARPRINFSSIFSTVQPIVDDVRNRGDAAVKDYTVRFDKVELEKIIENVNELPDPELDEAVRESFDVAYSNIYAFHAAQKPVEKVVENMKGVRCKRVARSISSVGLYVPGGTAVLPSTALMLSIPAQIAGCKTIVLATPPSSDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012429`
TK1151 ID	TkA02G561740
OH-1004 ID	LXL04_012429
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 98.016 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012429

Location Chr03:12151941-12155422 (+)

Description Similar to HDH: Histidinol dehydrogenase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63890`	Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0232700`	Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012429 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000105 L-histidine biosynthetic process Biological Process

GO:0009411 response to UV Biological Process

GO:0009555 pollen development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004399 histidinol dehydrogenase activity Molecular Function

GO:0004635 phosphoribosyl-AMP cyclohydrolase activity Molecular Function

GO:0004636 phosphoribosyl-ATP diphosphatase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G63890

dosa:Os01g0232700

ncr:NCU03139

spo:2539650

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.396

Rank 1 · LXL04_012429 · OH-1004

Plastid0.306

Rank 2 · LXL04_012429 · OH-1004

Cytoplasm0.217

Rank 3 · LXL04_012429 · OH-1004

Peroxisome0.133

Rank 4 · LXL04_012429 · OH-1004

Nucleus0.072

Rank 5 · LXL04_012429 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00815.26Histidinol_dh79-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012429	`PF00815.26`	Histidinol_dh	79	485	2.3e-157	524.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5U8`	Arabidopsis thaliana	Histidinol dehydrogenase, chloroplastic	82.151%	Swiss-Prot	strong database homology
`Q5NAY4`	Oryza sativa subsp. japonica	Histidinol dehydrogenase, chloroplastic	81.674%	Swiss-Prot	strong database homology

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