LXL04_012274 | RubberDandelionOmics

Gene overview

LXL04_012274

Reference: OH-1004 Chr: Chr03 Coordinates: 9560716-9566041 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1689 bp · LXL04_012274|LXL04_012274|OH1004|cDNA

ATGGAGGGAAAGGAAGAGGATGTTCATTTGGGAGCTAACAAGTACCGGGAAAGACAACCGCTTGGAACGGCGGCGCAGGTACCAGATAAGGATTACCAAGAACCACCACCAGCTCCGTTATTTGAGCCGGGGGAGCTCTCTTCCTGGTCATTTTGGAGAGCTGGGATCGCCGAGTTTATCGCTACCTTTCTGTTTTTATACATCACTGTTTTGACGGTTTTTGGAGTAGTTAAGTCGCCGACCAAGTGCTCCACCGTTGG...

CDS

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1689 bp · LXL04_012274|LXL04_012274|OH1004|CDS

ATGGAGGGAAAGGAAGAGGATGTTCATTTGGGAGCTAACAAGTACCGGGAAAGACAACCGCTTGGAACGGCGGCGCAGGTACCAGATAAGGATTACCAAGAACCACCACCAGCTCCGTTATTTGAGCCGGGGGAGCTCTCTTCCTGGTCATTTTGGAGAGCTGGGATCGCCGAGTTTATCGCTACCTTTCTGTTTTTATACATCACTGTTTTGACGGTTTTTGGAGTAGTTAAGTCGCCGACCAAGTGCTCCACCGTTGG...

Protein

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562 aa · LXL04_012274|LXL04_012274|OH1004|PROTEIN

MEGKEEDVHLGANKYRERQPLGTAAQVPDKDYQEPPPAPLFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVFGVVKSPTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYMVMQCLGAICGAGVVRGFEGGAQYKLHGGGANTVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNQGHAWDDHWVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012274`
TK1151 ID	TkA02G576840
OH-1004 ID	LXL04_012274
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 99.303 / OH-1004 50.712 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012274

Location Chr03:9560716-9566041 (-)

Description Similar to PIP1.4: Probable aquaporin PIP1-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00430`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release
`At2g45960`	Water channel required to facilitate the transport of water across cell membrane.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0666200`	May function as water channel to facilitate the transport of water across cell membrane.	Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance.2000 · DOI: 10.1016/s0168-9452(99)00269-1

Functional annotation source

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Functional annotation source: OH1004 · LXL04_012274 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0015670 carbon dioxide transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0015250 water channel activity Molecular Function

KEGG gene cross-reference

ath:AT2G45960

ath:AT4G00430

mus:104000197

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.461

Rank 1 · LXL04_012274 · OH-1004

Cytoplasm0.222

Rank 2 · LXL04_012274 · OH-1004

Lysosome / Vacuole0.214

Rank 3 · LXL04_012274 · OH-1004

Endoplasmic reticulum0.177

Rank 4 · LXL04_012274 · OH-1004

Golgi apparatus0.124

Rank 5 · LXL04_012274 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230.26MIP45-275 aa

PF00230.26MIP320-550 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012274	`PF00230.26`	MIP	45	275	1.5e-165	548.9
LXL04_012274	`PF00230.26`	MIP	320	550	1.5e-165	548.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39196`	Arabidopsis thaliana	Probable aquaporin PIP1-4	86.667%	Swiss-Prot	moderate database homology
`Q06611`	Arabidopsis thaliana	Aquaporin PIP1-2	87.018%	Swiss-Prot	moderate database homology
`Q6EU94`	Oryza sativa subsp. japonica	Aquaporin PIP1-1	85.017%	Swiss-Prot	moderate database homology

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