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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_012243
Reference: OH-1004 Chr: Chr03 Coordinates: 8990812-8996832 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3240 bp · LXL04_012243|LXL04_012243|OH1004|cDNA

ATGAGCGAAATCAAAGAAGCGTTTGTATGCATACAACCTCTAATCAAGTATTACCGGATTCTCGCATTCGCATTCAGGGAGATGGAAATTAGACCTTATAGTTGTTATGTTCGTCGTCATTGCCTTTGCTCCTCGGCATCTACAAATCAACATACATCTCTTCTTCATCTGGACTCCGCATCTGTAGCATTCAATGGGGGGTTTTGGTTTCCTATTACGGCTAAAGCTTCTGCATCAACTTCCTCATGCCAATATTTTAA...

CDS

Download CDS FASTA

3240 bp · LXL04_012243|LXL04_012243|OH1004|CDS

ATGAGCGAAATCAAAGAAGCGTTTGTATGCATACAACCTCTAATCAAGTATTACCGGATTCTCGCATTCGCATTCAGGGAGATGGAAATTAGACCTTATAGTTGTTATGTTCGTCGTCATTGCCTTTGCTCCTCGGCATCTACAAATCAACATACATCTCTTCTTCATCTGGACTCCGCATCTGTAGCATTCAATGGGGGGTTTTGGTTTCCTATTACGGCTAAAGCTTCTGCATCAACTTCCTCATGCCAATATTTTAA...

Protein

Download Protein FASTA

1079 aa · LXL04_012243|LXL04_012243|OH1004|PROTEIN

MSEIKEAFVCIQPLIKYYRILAFAFREMEIRPYSCYVRRHCLCSSASTNQHTSLLHLDSASVAFNGGFWFPITAKASASTSSCQYFNLEDAWLLVHRTNASSLDLLLFKENMTSIDQSYDRYDYRYSMCEYWLGSGYRPITMNWNKNTDCCNWDGITCNHLTGDVIGIDLSCGMLQGTIHPNTTLFHLPHLQTLNLAFNKFSPSQLPRNIGGLSNSLTLLNLSFCLFSGDIPGEILYLPKLVTLDLSLNYGLQLQPSILK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_012243
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_012243
LocationChr03:8990812-8996832 (-)
DescriptionSimilar to RLP6: Receptor-like protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At3g11010 Receptor-like protein 34. No verified direct reference in this release
At3g11080 Receptor-like protein 35. No verified direct reference in this release
At1g47890 Receptor-like protein 7. No verified direct reference in this release
At2g15080 Receptor-like protein 19. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012243 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT2G15080
ath:AT3G11010
ath:AT3G11080
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.840
Rank 1 · LXL04_012243 · OH-1004
Endoplasmic reticulum0.108
Rank 2 · LXL04_012243 · OH-1004
Cytoplasm0.066
Rank 3 · LXL04_012243 · OH-1004
Nucleus0.056
Rank 4 · LXL04_012243 · OH-1004
Lysosome / Vacuole0.026
Rank 5 · LXL04_012243 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598.2LRR_14341-410 aa
PF13855.13LRR_8367-425 aa
PF13855.13LRR_8389-449 aa
PF24758.2LRR_At5g56370428-528 aa
PF13855.13LRR_8433-478 aa
PF13855.13LRR_8567-623 aa
PF23598.2LRR_14608-842 aa
PF13855.13LRR_8613-671 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_012243PF23598.2LRR_143414104.2e-29102.1
LXL04_012243PF13855.13LRR_83674258.4e-50167.1
LXL04_012243PF13855.13LRR_83894498.4e-50167.1
LXL04_012243PF24758.2LRR_At5g563704285282.4e-1041.2
LXL04_012243PF13855.13LRR_84334788.4e-50167.1
LXL04_012243PF13855.13LRR_85676238.4e-50167.1
LXL04_012243PF23598.2LRR_146088424.2e-29102.1
LXL04_012243PF13855.13LRR_86136718.4e-50167.1
LXL04_012243PF13855.13LRR_87598188.4e-50167.1
LXL04_012243PF12799.14LRR_47597946.3e-47157.3
LXL04_012243PF12799.14LRR_49029396.3e-47157.3
LXL04_012243PF13855.13LRR_89039588.4e-50167.1
LXL04_012243PF13855.13LRR_89419828.4e-50167.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C637Arabidopsis thalianaReceptor-like protein 633.777%Swiss-Protmoderate database homology
Q9SRL2Arabidopsis thalianaReceptor-like protein 3433.798%Swiss-Protmoderate database homology
Q9SRL7Arabidopsis thalianaReceptor-like protein 3533.369%Swiss-Protmoderate database homology
Q9C699Arabidopsis thalianaReceptor-like protein 734.979%Swiss-Protmoderate database homology
Q9ZUK3Arabidopsis thalianaReceptor-like protein 1934.372%Swiss-Protmoderate database homology

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