LXL04_012133 | RubberDandelionOmics

Gene overview

LXL04_012133

Reference: OH-1004 Chr: Chr03 Coordinates: 6993935-6995342 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1171 bp · LXL04_012133|LXL04_012133|OH1004|cDNA

ATGACGTCACACCCATTTTTTTCTAGATCCCTTTTCTCTTTCACTTTCGGAAATTTCCTGGAAAGTATTTACATGCTTCCTATCACCTCGACTTCACCCTCTAAGATTCACGGCCACTATCTCTCTtcatttatatacatatataagcAACAACCCACCAGTCCACCCCTACAACTACACTCTACGGAAGCTTATATTCACCGATTACACATAAATCTGAGATTTCCTCTGTATTATACTATTATGGAAACGAGCAAGAG...

CDS

Download CDS FASTA

1158 bp · LXL04_012133|LXL04_012133|OH1004|CDS

ATGACGTCACACCCATTTTTTTCTAGATCCCTTTTCTCTTTCACTTTCGGAAATTTCCTGGAAAGTATTTACATGCTTCCTATCACCTCGACTTCACCCTCTAAGATTCACGGCCACTATCTCTCTTCATTTATATACATATATAAGCAACAACCCACCAGTCCACCCCTACAACTACACTCTACGGAAGCTTATATTCACCGATTACACATAAATCTGAGATTTCCTCTGTATTATACTATTATGGAAACGAGCAAGAG...

Protein

Download Protein FASTA

385 aa · LXL04_012133|LXL04_012133|OH1004|PROTEIN

MTSHPFFSRSLFSFTFGNFLESIYMLPITSTSPSKIHGHYLSSFIYIYKQQPTSPPLQLHSTEAYIHRLHINLRFPLYYTIMETSKRRLNETLIRGQDSAKKLQTLLRRRVYDDVSVSVEDLVMEILGSFSGGLSLLESFDFGELSGAPASSHVSLAYSGDQIPEVSTGKRPAPAVKERRGCYKRRRTIDSRVIVSATIEDGYAWRKYGQKLILNSKSPRCYYRCTHKPDHGCKALKQVQQLEDDTKMYHITYFGHHTCP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012133`
TK1151 ID	TkA02G585470
OH-1004 ID	LXL04_012133
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012133

Location Chr03:6993935-6995342 (+)

Description Similar to WRKY70: WRKY DNA-binding transcription factor 70

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56400`	Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways.	WRKY70 modulates the selection of signaling pathways in plant defense.2006 · DOI: 10.1111/j.1365-313x.2006.02712.x The WRKY70 transcription factor of Arabidopsis influences both the plant senescence and defense signaling pathways.2007 · DOI: 10.1007/s00425-006-0474-y Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica.2007 · DOI: 10.1094/mpmi-20-2-0120 Transcription factor WRKY70 displays important but no indispensable roles in jasmonate and salicylic acid signaling.2008 · DOI: 10.1111/j.1744-7909.2008.00653.x WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.2012 · DOI: 10.1093/jxb/err450 EDS1 contributes to nonhost resistance of Arabidopsis thaliana against Erwinia amylovora.2012 · DOI: 10.1094/mpmi-05-11-0111 Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae.2012 · DOI: 10.1016/j.plantsci.2011.12.003 Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis.2013 · DOI: 10.1111/nph.12378 Identification of a novel type of WRKY transcription factor binding site in elicitor-responsive cis-sequences from Arabidopsis thaliana.2014 · DOI: 10.1007/s11103-013-0136-y Density-dependent interference of aphids with caterpillar-induced defenses in Arabidopsis: involvement of phytohormones and transcription factors.2015 · DOI: 10.1093/pcp/pcu150 Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis.2016 · DOI: 10.1093/jxb/erv445 Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.2017 · DOI: 10.1105/tpc.17.00364 WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis.2017 · DOI: 10.1371/journal.pone.0183731
`At2g40750`	Transcription factor.	WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana.2012 · DOI: 10.1093/jxb/err450 EDS1 contributes to nonhost resistance of Arabidopsis thaliana against Erwinia amylovora.2012 · DOI: 10.1094/mpmi-05-11-0111 Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture in Arabidopsis.2013 · DOI: 10.1111/nph.12378 Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.2017 · DOI: 10.1105/tpc.17.00364 WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis.2017 · DOI: 10.1371/journal.pone.0183731

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8AWM1`	Transcriptional activator involved in defense responses against pathogens.	No verified direct reference in this release
`Os05g0322900`	Transcriptional activator involved in defense responses against pathogens.	Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance.2007 · DOI: 10.1105/tpc.106.046250 A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.2009 · DOI: 10.1104/pp.109.145623 Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction.2010 · DOI: 10.1094/mpmi-23-6-0791 OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.2011 · DOI: 10.1093/jxb/err144 Rice WRKY45 plays important roles in fungal and bacterial disease resistance.2012 · DOI: 10.1111/j.1364-3703.2011.00732.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012133 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0002215 defense response to nematode Biological Process

GO:0002229 defense response to oomycetes Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009624 response to nematode Biological Process

GO:0009625 response to insect Biological Process

GO:0009682 induced systemic resistance Biological Process

KEGG gene cross-reference

ath:AT2G40750

ath:AT3G56400

dosa:Os05g0322900

osa:4338413

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.941

Rank 1 · LXL04_012133 · OH-1004

Cytoplasm0.143

Rank 2 · LXL04_012133 · OH-1004

Cell membrane0.030

Rank 3 · LXL04_012133 · OH-1004

Endoplasmic reticulum0.023

Rank 4 · LXL04_012133 · OH-1004

Mitochondrion0.013

Rank 5 · LXL04_012133 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106.22WRKY200-260 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012133	`PF03106.22`	WRKY	200	260	1.3e-24	86.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LY00`	Arabidopsis thaliana	Probable WRKY transcription factor 70	41.667%	Swiss-Prot	weak database homology
`Q93WU8`	Arabidopsis thaliana	Probable WRKY transcription factor 54	30.746%	Swiss-Prot	moderate database homology
`B8AWM1`	Oryza sativa subsp. indica	Transcription factor WRKY45-2	35.326%	Swiss-Prot	weak database homology
`Q5W6D6`	Oryza sativa subsp. japonica	Transcription factor WRKY45-1	35.326%	Swiss-Prot	weak database homology

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