LXL04_012130 | RubberDandelionOmics

Gene overview

LXL04_012130

Reference: OH-1004 Chr: Chr03 Coordinates: 6942257-6942965 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

453 bp · LXL04_012130|LXL04_012130|OH1004|cDNA

ATGGTAGGCCAAACTTGCTATAATTTTAGTTTTTTCAAAAAACAATACTTCAAATTTACATGTTCTCATGTTGGGAGGCCCGTGGGTTTTGAAGCGTACGTATATATAGATTCTTCTGCTTCTCATTCACGCAGCGCGCTTCAAATAATCAAATCGATCGTGTCTTTTGTACCCAGGCTCATAGATCTTGTAAAAGCCCTAGAGATGGAGTGGAATTCACAAACCCCACAGTCTCTGTCGCAATCTTTCCTCGATACGCT...

CDS

Download CDS FASTA

453 bp · LXL04_012130|LXL04_012130|OH1004|CDS

ATGGTAGGCCAAACTTGCTATAATTTTAGTTTTTTCAAAAAACAATACTTCAAATTTACATGTTCTCATGTTGGGAGGCCCGTGGGTTTTGAAGCGTACGTATATATAGATTCTTCTGCTTCTCATTCACGCAGCGCGCTTCAAATAATCAAATCGATCGTGTCTTTTGTACCCAGGCTCATAGATCTTGTAAAAGCCCTAGAGATGGAGTGGAATTCACAAACCCCACAGTCTCTGTCGCAATCTTTCCTCGATACGCT...

Protein

Download Protein FASTA

150 aa · LXL04_012130|LXL04_012130|OH1004|PROTEIN

MVGQTCYNFSFFKKQYFKFTCSHVGRPVGFEAYVYIDSSASHSRSALQIIKSIVSFVPRLIDLVKALEMEWNSQTPQSLSQSFLDTLSPHSEPRRRAENNLSNAADNPNYGLAVLRIVADTSVDEHIRQCAAVNFKNHLKTRWLWPDLKP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012130`
TK1151 ID	TkA02G586270
OH-1004 ID	LXL04_012130
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 97.638 / OH-1004 82.667 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012130

Location Chr03:6942257-6942965 (-)

Description Similar to CAS: Exportin-2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g46520`	Export receptor for importin alpha.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012130 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006606 protein import into nucleus Biological Process

GO:0006611 protein export from nucleus Biological Process

GO:0007589 body fluid secretion Biological Process

GO:0005635 nuclear envelope Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009925 basal plasma membrane Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0016328 lateral plasma membrane Cellular Component

GO:0005049 nuclear export signal receptor activity Molecular Function

GO:0031267 small GTPase binding Molecular Function

KEGG gene cross-reference

ath:AT2G46520

dre:30707

onl:100534474

xla:444464

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.521

Rank 1 · LXL04_012130 · OH-1004

Cytoplasm0.500

Rank 2 · LXL04_012130 · OH-1004

Mitochondrion0.074

Rank 3 · LXL04_012130 · OH-1004

Endoplasmic reticulum0.063

Rank 4 · LXL04_012130 · OH-1004

Cell membrane0.049

Rank 5 · LXL04_012130 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03810.26IBN_N97-143 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012130	`PF03810.26`	IBN_N	97	143	5.6e-10	39.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZPY7`	Arabidopsis thaliana	Exportin-2	65.333%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card