LXL04_012017 | RubberDandelionOmics

Gene overview

LXL04_012017

Reference: OH-1004 Chr: Chr03 Coordinates: 4848285-4849316 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1032 bp · LXL04_012017|LXL04_012017|OH1004|cDNA

ATGCGCTGCCGTCGGAGGTCAATGGCTCCACCAATACACACACTACTCCTactctctttcttcttcttctgcctCCGTCATTCTACGGCATGGCGCCCCTGGCCCCATACGAAAAACAACGTCACCGAGCTCGAATTCGGAGCCGATAAAAAGTACGAAGGCTCGTCGGAGATCGTAAAATTAAAATATCATATGGGACCAGTTCTTACCTCTAACATCACCGTACACATTATCTGGTACGGAACATGGCCCAGCGCCCA...

CDS

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1032 bp · LXL04_012017|LXL04_012017|OH1004|CDS

ATGCGCTGCCGTCGGAGGTCAATGGCTCCACCAATACACACACTACTCCTACTCTCTTTCTTCTTCTTCTGCCTCCGTCATTCTACGGCATGGCGCCCCTGGCCCCATACGAAAAACAACGTCACCGAGCTCGAATTCGGAGCCGATAAAAAGTACGAAGGCTCGTCGGAGATCGTAAAATTAAAATATCATATGGGACCAGTTCTTACCTCTAACATCACCGTACACATTATCTGGTACGGAACATGGCCCAGCGCCCA...

Protein

Download Protein FASTA

343 aa · LXL04_012017|LXL04_012017|OH1004|PROTEIN

MRCRRRSMAPPIHTLLLLSFFFFCLRHSTAWRPWPHTKNNVTELEFGADKKYEGSSEIVKLKYHMGPVLTSNITVHIIWYGTWPSAQKRIIRDFISSISAADHRPPSVSGWWKTVQLYTDQTGFNVSRTVRLGKEKNDRLLSHGKTLTRLSIQSVIKSAVTAKTKPLPIQPKGGVYLLLTADDVYVQDFCQNVCGFHYFTYSSIVGYTLPYAWIGNSAKLCPGMCAYPFAVPYYIPGLKPLKSPNGEAAIDGMISVIAHE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012017`
TK1151 ID	TkA02G592560
OH-1004 ID	LXL04_012017
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 84.211 / OH-1004 41.983 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012017

Location Chr03:4848285-4849316 (+)

Description Similar to EXL3: Protein EXORDIUM-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51550`	May play a role in a brassinosteroid-dependent regulation of growth and development.	No verified direct reference in this release
`At2g17230`	May play a role in a brassinosteroid-dependent regulation of growth and development.	No verified direct reference in this release
`At2g35150`	May play a role in a brassinosteroid-dependent regulation of growth and development.	No verified direct reference in this release
`At1g35140`	May play a role in a brassinosteroid-dependent regulatory pathway that controls growth and development under low carbon and energy availability.	EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis.2011 · DOI: 10.1104/pp.111.177204

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012017 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G35140

ath:AT2G17230

ath:AT2G35150

ath:AT5G51550

nta:107822731

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.474

Rank 1 · LXL04_012017 · OH-1004

Cell membrane0.125

Rank 2 · LXL04_012017 · OH-1004

Lysosome / Vacuole0.089

Rank 3 · LXL04_012017 · OH-1004

Endoplasmic reticulum0.076

Rank 4 · LXL04_012017 · OH-1004

Cytoplasm0.067

Rank 5 · LXL04_012017 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04674.18Phi_161-338 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012017	`PF04674.18`	Phi_1	61	338	2.5e-100	336.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHM9`	Arabidopsis thaliana	Protein EXORDIUM-like 3	72.644%	Swiss-Prot	strong database homology
`Q9SII5`	Arabidopsis thaliana	Protein EXORDIUM-like 5	57.895%	Swiss-Prot	strong database homology
`O82176`	Arabidopsis thaliana	Protein EXORDIUM-like 7	51.786%	Swiss-Prot	strong database homology
`Q9C6E4`	Arabidopsis thaliana	Protein EXORDIUM-like 1	33.444%	Swiss-Prot	moderate database homology

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