LXL04_011981 | RubberDandelionOmics

Gene overview

LXL04_011981

Reference: OH-1004 Chr: Chr03 Coordinates: 4093761-4094296 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

380 bp · LXL04_011981|LXL04_011981|OH1004|cDNA

AATTGTCGCAAATCAGGACTGCTGTCAGGAATTTGGATTAATTCGGAATGGGAAGCACCACTAAAGGATCAGCTTACCAGGTCACTGCAAATCCGTGGGACCTTGAATGTGTAGCAGGGGGTTCCTGCGGCGGCCAAGTTGCAGCTGTTTCTACTAGACAATGTGTAGTATCATTAGGAAGTGACACCGGTAGCAAGCGAGAGGTTATCGACTTCACATCTCAGTTTTATCCCAAAGATTATTTCGAATCACAGCCATTA...

CDS

Download CDS FASTA

333 bp · LXL04_011981|LXL04_011981|OH1004|CDS

ATGGGAAGCACCACTAAAGGATCAGCTTACCAGGTCACTGCAAATCCGTGGGACCTTGAATGTGTAGCAGGGGGTTCCTGCGGCGGCCAAGTTGCAGCTGTTTCTACTAGACAATGTGTAGTATCATTAGGAAGTGACACCGGTAGCAAGCGAGAGGTTATCGACTTCACATCTCAGTTTTATCCCAAAGATTATTTCGAATCACAGCCATTAAAAGGACTACGAGTTGGTGTTATTCGTGAAACCCTTGGAGATGGAGT...

Protein

Download Protein FASTA

110 aa · LXL04_011981|LXL04_011981|OH1004|PROTEIN

MGSTTKGSAYQVTANPWDLECVAGGSCGGQVAAVSTRQCVVSLGSDTGSKREVIDFTSQFYPKDYFESQPLKGLRVGVIRETLGDGVDEEVILSSVVLCIYEKIPMSRKK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011981`
TK1151 ID	TkA02G595540
OH-1004 ID	LXL04_011981
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011981

Location Chr03:4093761-4094296 (+)

Description Similar to GATA: Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g25660`	Catalytic subunit of the mitochondrial Glu-tRNA(Gln) amidotransferase complex GatCAB.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0643200`	Catalytic subunit of the mitochondrial Glu-tRNA(Gln) amidotransferase complex GatCAB.	No verified direct reference in this release
`UniProt: Q25A68`	Catalytic subunit of the mitochondrial Glu-tRNA(Gln) amidotransferase complex GatCAB.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011981 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0032543 mitochondrial translation Biological Process

GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides Molecular Function

GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity Molecular Function

KEGG gene cross-reference

ath:AT3G25660

cno:NT01CX_0431

dosa:Os04g0643200

vvi:100247231

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.566

Rank 1 · LXL04_011981 · OH-1004

Cytoplasm0.175

Rank 2 · LXL04_011981 · OH-1004

Nucleus0.093

Rank 3 · LXL04_011981 · OH-1004

Mitochondrion0.070

Rank 4 · LXL04_011981 · OH-1004

Peroxisome0.057

Rank 5 · LXL04_011981 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01425.27Amidase1-48 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011981	`PF01425.27`	Amidase	1	48	8.3e-15	55.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LI77`	Arabidopsis thaliana	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	34.839%	Swiss-Prot	moderate database homology
`Q7X8Z8`	Oryza sativa subsp. japonica	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	32.278%	Swiss-Prot	moderate database homology
`Q25A68`	Oryza sativa subsp. indica	Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial	32.278%	Swiss-Prot	moderate database homology

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