LXL04_011951 | RubberDandelionOmics

Gene overview

LXL04_011951

Reference: OH-1004 Chr: Chr03 Coordinates: 3516433-3521051 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · LXL04_011951|LXL04_011951|OH1004|cDNA

ATGCCAGTGCCGCCCCTGTGCATGGCTAACCGTCGCCGCAATTCCTCCGCTTTTCAGCTTCCTCAAAATGTTACCTCTCAATCCACCACCACCGACGCAGCTGGTGGGTCCTCCGGCCGCCACTCAGTTTACCATGGCATCCGAATGCGAGCTGGAAAATGGGTTTCCGAAATACGTGAAGCAAACAAGTCCAGTCGCATATGGCTTGGTTCTTATCCAACACCGGAGATGGCAGCTGCCGCCTACGACGTCGCTGCATT...

CDS

Download CDS FASTA

1284 bp · LXL04_011951|LXL04_011951|OH1004|CDS

ATGCCAGTGCCGCCCCTGTGCATGGCTAACCGTCGCCGCAATTCCTCCGCTTTTCAGCTTCCTCAAAATGTTACCTCTCAATCCACCACCACCGACGCAGCTGGTGGGTCCTCCGGCCGCCACTCAGTTTACCATGGCATCCGAATGCGAGCTGGAAAATGGGTTTCCGAAATACGTGAAGCAAACAAGTCCAGTCGCATATGGCTTGGTTCTTATCCAACACCGGAGATGGCAGCTGCCGCCTACGACGTCGCTGCATT...

Protein

Download Protein FASTA

427 aa · LXL04_011951|LXL04_011951|OH1004|PROTEIN

MPVPPLCMANRRRNSSAFQLPQNVTSQSTTTDAAGGSSGRHSVYHGIRMRAGKWVSEIREANKSSRIWLGSYPTPEMAAAAYDVAALAVKGMYAVLNFSDSAISNTLPDCPTADDIRAAAARAAASRSSTYEYGGGSMTVDEFEFQGFPLMPIANRQSPIAISNLRSQFQIANRQCNSKSLIANRQSQVCSRSLLQLQVVTPHQVIATCCCLQLNLRTEIDVSNMKLRLLSTEFDVYNLVLVSLSIDSTIVLPVNQLAMI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011951`
TK1151 ID	TkA04G388100
OH-1004 ID	LXL04_011951
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.900
Protein coverage (%)	TK1151 44.000 / OH-1004 10.304 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011951

Location Chr03:3516433-3521051 (+)

Description Similar to DREB3: Dehydration-responsive element-binding protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11590`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g25810`	Putative transcriptional activator.	No verified direct reference in this release
`At5g52020`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g51990`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis.2002 · DOI: 10.1104/pp.006478
`At4g25470`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.2005 · DOI: 10.1104/pp.105.068510

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011951 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G11590

ath:AT5G25810

ath:AT5G51990

ath:AT5G52020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.669

Rank 1 · LXL04_011951 · OH-1004

Cytoplasm0.302

Rank 2 · LXL04_011951 · OH-1004

Cell membrane0.082

Rank 3 · LXL04_011951 · OH-1004

Endoplasmic reticulum0.066

Rank 4 · LXL04_011951 · OH-1004

Mitochondrion0.031

Rank 5 · LXL04_011951 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847.27AP243-91 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011951	`PF00847.27`	AP2	43	91	1.1e-09	39.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LYD3`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 3	56.566%	Swiss-Prot	weak database homology
`Q39127`	Arabidopsis thaliana	Ethylene-responsive transcription factor TINY	59.091%	Swiss-Prot	weak database homology
`Q9FJ90`	Arabidopsis thaliana	Ethylene-responsive transcription factor ERF025	65.934%	Swiss-Prot	weak database homology
`Q9FJ93`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 1D	55.814%	Swiss-Prot	weak database homology
`Q9SYS6`	Arabidopsis thaliana	Dehydration-responsive element-binding protein 1C	54.651%	Swiss-Prot	weak database homology

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