LXL04_011917 | RubberDandelionOmics

Gene overview

LXL04_011917

Reference: OH-1004 Chr: Chr03 Coordinates: 2745870-2751321 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2625 bp · LXL04_011917|LXL04_011917|OH1004|cDNA

ATGGCTACAAAATTCAGTAAATCCTACATTTTCTCTCTGGCTGTGTTTTTGTCTCTCATGTTTGTGTTGTCCATGGCTTTCACACCTCAAGACAACTTCCTCATCAACTGTGGTTCAACCAGAAACGCAATAGTCGACGGTAGAGAGTTTTTGGGTGATTCGAACAAACCCGGGTCGGGTTTTCTATCTACTGACAAATCAACCACTCTATCAAACCCGGACCGAAATTCGTCTGAGCTCTACACTACTGCGAGGGTTTT...

CDS

Download CDS FASTA

2625 bp · LXL04_011917|LXL04_011917|OH1004|CDS

ATGGCTACAAAATTCAGTAAATCCTACATTTTCTCTCTGGCTGTGTTTTTGTCTCTCATGTTTGTGTTGTCCATGGCTTTCACACCTCAAGACAACTTCCTCATCAACTGTGGTTCAACCAGAAACGCAATAGTCGACGGTAGAGAGTTTTTGGGTGATTCGAACAAACCCGGGTCGGGTTTTCTATCTACTGACAAATCAACCACTCTATCAAACCCGGACCGAAATTCGTCTGAGCTCTACACTACTGCGAGGGTTTT...

Protein

Download Protein FASTA

874 aa · LXL04_011917|LXL04_011917|OH1004|PROTEIN

MATKFSKSYIFSLAVFLSLMFVLSMAFTPQDNFLINCGSTRNAIVDGREFLGDSNKPGSGFLSTDKSTTLSNPDRNSSELYTTARVFTSSSSYGFEIGKTGTHLVRLHFSPFSSQNFHLSSSNFSVSVHGSLILSNFRAEFTTVKEFILMVDGIHLDITFDPLGKTGFAFVTAIEVFSAPIDLIVDGGAKSINIDGVQEFKNLPSQILETVHRINVGGSKITPFNDTLWRSWVPDEEFLAIKSSAKIVTTTQLPNYQKGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011917`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011917

Location Chr03:2745870-2751321 (+)

Description Similar to At5g24010: Probable receptor-like protein kinase At5g24010

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At4g39110`	Probable receptor-like protein kinase At4g39110.	No verified direct reference in this release
`At2g21480`	Probable receptor-like protein kinase At2g21480.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011917 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0080092 regulation of pollen tube growth Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0043680 filiform apparatus Cellular Component

KEGG gene cross-reference

ath:AT2G21480

ath:AT3G46290

ath:AT4G39110

ath:AT5G24010

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.669

Rank 1 · LXL04_011917 · OH-1004

Endoplasmic reticulum0.125

Rank 2 · LXL04_011917 · OH-1004

Cytoplasm0.099

Rank 3 · LXL04_011917 · OH-1004

Lysosome / Vacuole0.097

Rank 4 · LXL04_011917 · OH-1004

Nucleus0.059

Rank 5 · LXL04_011917 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11721.15Malectin34-137 aa

PF12819.14Malectin_like35-391 aa

PF00069.32Pkinase464-663 aa

PF07714.24PK_Tyr_Ser-Thr466-657 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011917	`PF11721.15`	Malectin	34	137	1.5e-14	55.1
LXL04_011917	`PF12819.14`	Malectin_like	35	391	1.4e-26	94.3
LXL04_011917	`PF00069.32`	Pkinase	464	663	1.2e-39	137.0
LXL04_011917	`PF07714.24`	PK_Tyr_Ser-Thr	466	657	4e-44	151.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLW0`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g24010	59.658%	Swiss-Prot	strong database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	48.139%	Swiss-Prot	moderate database homology
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	49.672%	Swiss-Prot	moderate database homology
`Q9T020`	Arabidopsis thaliana	Probable receptor-like protein kinase At4g39110	47.201%	Swiss-Prot	moderate database homology
`Q9SJT0`	Arabidopsis thaliana	Probable receptor-like protein kinase At2g21480	46.076%	Swiss-Prot	moderate database homology

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