Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2067 bp · LXL04_011708|LXL04_011708|OH1004|cDNA
ATGATGGAATTTAGCAGAGTAGTTTTGAAGACAAGCGAAGGGGCAGTTGAATATTATGAAGACCTGCGCGTAATTCAAATTCTACGAGCTTCCTCCACTGGAAGGATGGAGTGCAATAGAGATGAAGCTAAAAGGGCGAAAGAAATTGCTGAAAGTAAGTTGTCTAGAAAGGACATAATGGGGGCCAAGAAATTTGCTTTGAAGGCTCAAACTTTGTTTCCTGGGCTTGATGGTATTTCCCAGCTTTTAGCAACTGTAGA...
2067 bp · LXL04_011708|LXL04_011708|OH1004|CDS
ATGATGGAATTTAGCAGAGTAGTTTTGAAGACAAGCGAAGGGGCAGTTGAATATTATGAAGACCTGCGCGTAATTCAAATTCTACGAGCTTCCTCCACTGGAAGGATGGAGTGCAATAGAGATGAAGCTAAAAGGGCGAAAGAAATTGCTGAAAGTAAGTTGTCTAGAAAGGACATAATGGGGGCCAAGAAATTTGCTTTGAAGGCTCAAACTTTGTTTCCTGGGCTTGATGGTATTTCCCAGCTTTTAGCAACTGTAGA...
Protein
Download Protein FASTA688 aa · LXL04_011708|LXL04_011708|OH1004|PROTEIN
MMEFSRVVLKTSEGAVEYYEDLRVIQILRASSTGRMECNRDEAKRAKEIAESKLSRKDIMGAKKFALKAQTLFPGLDGISQLLATVDVYVAAENKINGELDFYGILGVSPLADDKTVRKHYRELALSLHPDKNKSVGADGAFTYISEAFNFLSDKEKRSSYDNKRNSRGYGFKHKVHTQTNGSRAPHQPRQNGFHNFTKSAPSQQTKVPPAAQQTKFTPVQPAQKTKAAPARTKATPAQTKDDVNAIPTMKTCSASVSLS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011708 |
|---|---|
| TK1151 ID | TkA03G612640 |
| OH-1004 ID | LXL04_011708 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 94.913Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011708 |
|---|---|
| Location | Chr02:169793112-169795813 (+) |
| Description | Similar to DNAJB12: DnaJ homolog subfamily B member 12 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0036503 ERAD pathway Biological Process GO:0065003 protein-containing complex assembly Biological Process GO:0071218 cellular response to misfolded protein Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0031965 nuclear membrane Cellular Component GO:0030544 Hsp70 protein binding Molecular Function |
| KEGG gene cross-reference | bta:533603 bta:538849 mmu:70604 xla:380336 xtr:549342 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00226.37DnaJ101-162 aaPF23551.1Zn_ribbon_20267-300 aaPF11926.14DUF3444443-629 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011708 | PF00226.37 | DnaJ | 101 | 162 | 1.4e-20 | 73.8 |
| LXL04_011708 | PF23551.1 | Zn_ribbon_20 | 267 | 300 | 2.6e-15 | 56.9 |
| LXL04_011708 | PF11926.14 | DUF3444 | 443 | 629 | 1.4e-53 | 182.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.