LXL04_011637 | RubberDandelionOmics

Gene overview

LXL04_011637

Reference: OH-1004 Chr: Chr02 Coordinates: 168628834-168631687 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1812 bp · LXL04_011637|LXL04_011637|OH1004|cDNA

ATGGTCGACGCCGGATTTGTCCGGTTTCCACTTCCATTAGACCCAGCAGCGCAAGAATTCCGACCAACGTTTCCGTACACCACAACCACCGTTTCACCGTTTTCCTTACATCCTGTATACTACTTGTACCCTCCGTCACTTCCACCAACACCACCGCCTGCGTTGGCGACGGTGGAGGCTTATTCGATTCCTGCTCCACAACCGATACTTCCGCCACCGTCAACCGTACCAACCCGGACACTTATATTGAGTTCCGTCGC...

CDS

Download CDS FASTA

1812 bp · LXL04_011637|LXL04_011637|OH1004|CDS

ATGGTCGACGCCGGATTTGTCCGGTTTCCACTTCCATTAGACCCAGCAGCGCAAGAATTCCGACCAACGTTTCCGTACACCACAACCACCGTTTCACCGTTTTCCTTACATCCTGTATACTACTTGTACCCTCCGTCACTTCCACCAACACCACCGCCTGCGTTGGCGACGGTGGAGGCTTATTCGATTCCTGCTCCACAACCGATACTTCCGCCACCGTCAACCGTACCAACCCGGACACTTATATTGAGTTCCGTCGC...

Protein

Download Protein FASTA

603 aa · LXL04_011637|LXL04_011637|OH1004|PROTEIN

MVDAGFVRFPLPLDPAAQEFRPTFPYTTTTVSPFSLHPVYYLYPPSLPPTPPPALATVEAYSIPAPQPILPPPSTVPTRTLILSSVAADVSESTVRRELEVFGDVRAVQMERLRDGIVTVHFYDLRQATEALNEIQEQHMQQQCRLRKHFQELTFLSPPPLPPPARGLISGRAIWAQFTFPVTAGLPDGYNQGTVVILNLDSDVSTAILRPILQAFGRVKEIRDTPLKRNQKSVEFYDTRDAANAVAAVNGREINGKKVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011637`
TK1151 ID	TkA03G607380
OH-1004 ID	LXL04_011637
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 81.924 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011637

Location Chr02:168628834-168631687 (-)

Description Similar to PLA2: Protein terminal ear1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g61960`	Probable RNA-binding transcriptional activator that plays a role in meiosis and vegetative growth.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0907900`	Probable RNA-binding protein.	PLASTOCHRON2 regulates leaf initiation and maturation in rice.2006 · DOI: 10.1105/tpc.105.037622
`UniProt: A2WY46`	Probable RNA-binding protein.	No verified direct reference in this release
`Os02g0517531`	Probable RNA-binding protein that may play a role in growth regulation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011637 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0051321 meiotic cell cycle Biological Process

GO:0005634 nucleus Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G61960

dosa:Os01g0907900

zma:541683

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.553

Rank 1 · LXL04_011637 · OH-1004

Cytoplasm0.417

Rank 2 · LXL04_011637 · OH-1004

Cell membrane0.140

Rank 3 · LXL04_011637 · OH-1004

Endoplasmic reticulum0.056

Rank 4 · LXL04_011637 · OH-1004

Plastid0.027

Rank 5 · LXL04_011637 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00076.29RRM_1195-259 aa

PF04059.19RRM_2396-502 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011637	`PF00076.29`	RRM_1	195	259	1.1e-14	54.7
LXL04_011637	`PF04059.19`	RRM_2	396	502	1.6e-34	118.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W4I9`	Arabidopsis thaliana	Protein MEI2-like 1	45.395%	Swiss-Prot	weak database homology
`Q0JGS5`	Oryza sativa subsp. japonica	Protein terminal ear1 homolog	72.727%	Swiss-Prot	weak database homology
`A2WY46`	Oryza sativa subsp. indica	Protein terminal ear1 homolog	38.710%	Swiss-Prot	weak database homology
`Q64M78`	Oryza sativa subsp. japonica	Protein MEI2-like 4	40.314%	Swiss-Prot	weak database homology

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