LXL04_011554 | RubberDandelionOmics

Gene overview

LXL04_011554

Reference: OH-1004 Chr: Chr02 Coordinates: 167216704-167219956 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

981 bp · LXL04_011554|LXL04_011554|OH1004|cDNA

ATGTCATTATCGTGCTCTGACTGCTTCTCCGACTTACTCTGCGGTGAGGACTCCGGAATATTATCCGGCGAGGATCAACCGGAGTGCTCTAACGATTACGAGTATTGTGCCGATTTCGACGATTCAATCGCGGAGTTTATAGAACAGGAGAGAAAGTTCGTTCCAGGAATCGATTACGTCGAGAGATTTCAATCTCAAGTTCTCGATGCATCTGCTAGAGAAGAATCTGTTGCATGGATCCTCAAGGTGCAACGTTTCTA...

CDS

Download CDS FASTA

981 bp · LXL04_011554|LXL04_011554|OH1004|CDS

ATGTCATTATCGTGCTCTGACTGCTTCTCCGACTTACTCTGCGGTGAGGACTCCGGAATATTATCCGGCGAGGATCAACCGGAGTGCTCTAACGATTACGAGTATTGTGCCGATTTCGACGATTCAATCGCGGAGTTTATAGAACAGGAGAGAAAGTTCGTTCCAGGAATCGATTACGTCGAGAGATTTCAATCTCAAGTTCTCGATGCATCTGCTAGAGAAGAATCTGTTGCATGGATCCTCAAGGTGCAACGTTTCTA...

Protein

Download Protein FASTA

326 aa · LXL04_011554|LXL04_011554|OH1004|PROTEIN

MSLSCSDCFSDLLCGEDSGILSGEDQPECSNDYEYCADFDDSIAEFIEQERKFVPGIDYVERFQSQVLDASAREESVAWILKVQRFYGFQPLTAYLAVNYLDRFIYCRGFPVANGWPLQLLSVACLSLAAKMEEPLVPSILDLQIEGAKYIFEPRTIRRMEFLVLGVLDWRLRSVTPFSFIRFFAHKIDPTGTYAGFLISRATQIILSNIQEASLLEYWPSCIAAATILCAASDLSNFSLINAEHAESWCDGLSKEKIIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011554`
TK1151 ID	TkA03G601430
OH-1004 ID	LXL04_011554
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011554

Location Chr02:167216704-167219956 (+)

Description Similar to CYCD1-1: Cyclin-D1-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g70210`	May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.	No verified direct reference in this release
`At5g65420`	May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0382300`	Cyclin-D2-1.	No verified direct reference in this release
`Os08g0421100`	Cyclin-D1-2.	No verified direct reference in this release
`Os06g0236600`	Cyclin-D1-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011554 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0009744 response to sucrose Biological Process

GO:0010440 stomatal lineage progression Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G70210

ath:AT5G65420

dosa:Os09g0382300

osa:9271619

osa:9272445

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963

Rank 1 · LXL04_011554 · OH-1004

Cytoplasm0.095

Rank 2 · LXL04_011554 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_011554 · OH-1004

Plastid0.015

Rank 4 · LXL04_011554 · OH-1004

Endoplasmic reticulum0.015

Rank 5 · LXL04_011554 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134.29Cyclin_N43-173 aa

PF02984.25Cyclin_C175-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011554	`PF00134.29`	Cyclin_N	43	173	4.6e-27	94.9
LXL04_011554	`PF02984.25`	Cyclin_C	175	269	7.4e-11	42.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42751`	Arabidopsis thaliana	Cyclin-D1-1	60.661%	Swiss-Prot	strong database homology
`Q8LGA1`	Arabidopsis thaliana	Cyclin-D4-1	41.905%	Swiss-Prot	moderate database homology
`Q0J233`	Oryza sativa subsp. japonica	Cyclin-D2-1	49.434%	Swiss-Prot	moderate database homology
`Q8H339`	Oryza sativa subsp. japonica	Cyclin-D1-2	54.783%	Swiss-Prot	moderate database homology
`Q67V81`	Oryza sativa subsp. japonica	Cyclin-D1-1	56.633%	Swiss-Prot	moderate database homology

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