LXL04_011498 | RubberDandelionOmics

Gene overview

LXL04_011498

Reference: OH-1004 Chr: Chr02 Coordinates: 165705546-165707276 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_011498|LXL04_011498|OH1004|cDNA

ATGGCCCCTCGCCGTCGCCGGCTCCCTTCCTTCTGCAAGATCTTGCTCGACCTTCCCGCCCCTCACCTGCCATTGCCACCCGATTTTGTAAGGAAGCACTTAGAGAACAATATTCCCGAGGATCCAACACTCCTATCCGTAAATGGAGGGTATTCGTGGAGATTGAAGATCAGAAAAGATGGTGATAATTACTGCTTTGCCGATGGATGGAGAGACGTCGTTGAAGATAGCCTGTTGGAATATGGGGATTTTCTCGTCTT...

CDS

Download CDS FASTA

1572 bp · LXL04_011498|LXL04_011498|OH1004|CDS

ATGGCCCCTCGCCGTCGCCGGCTCCCTTCCTTCTGCAAGATCTTGCTCGACCTTCCCGCCCCTCACCTGCCATTGCCACCCGATTTTGTAAGGAAGCACTTAGAGAACAATATTCCCGAGGATCCAACACTCCTATCCGTAAATGGAGGGTATTCGTGGAGATTGAAGATCAGAAAAGATGGTGATAATTACTGCTTTGCCGATGGATGGAGAGACGTCGTTGAAGATAGCCTGTTGGAATATGGGGATTTTCTCGTCTT...

Protein

Download Protein FASTA

523 aa · LXL04_011498|LXL04_011498|OH1004|PROTEIN

MAPRRRRLPSFCKILLDLPAPHLPLPPDFVRKHLENNIPEDPTLLSVNGGYSWRLKIRKDGDNYCFADGWRDVVEDSLLEYGDFLVFWLVDESTFKLSVFSPSGCEKMFPLNEDEEDDHVEEEDEVAQMNEQVKQEEELDDEDEEEEDDDEEEQEQEQEQESESEDEDFDEEEEEEEEEEEEDDDVYEGGGGGGGEEEDEGDEEDDDGDGDIDGNDGDPFFMRIISEDHTRSLRLRLPLGFARLAGLDRERRIKMKNLDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011498`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011498

Location Chr02:165705546-165707276 (-)

Description Similar to At5g66980: Putative B3 domain-containing protein At5g66980

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66980`	Putative B3 domain-containing protein At5g66980.	No verified direct reference in this release
`At4g01580`	B3 domain-containing protein At4g01580.	No verified direct reference in this release
`At3g18960`	B3 domain-containing protein At3g18960.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0197600`	B3 domain-containing protein Os11g0197600.	No verified direct reference in this release
`Os01g0905400`	B3 domain-containing protein Os01g0905400.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011498 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G18960

ath:AT4G01580

ath:AT5G66980

dosa:Os01g0905400

dosa:Os11g0197600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · LXL04_011498 · OH-1004

Cytoplasm0.073

Rank 2 · LXL04_011498 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_011498 · OH-1004

Endoplasmic reticulum0.012

Rank 4 · LXL04_011498 · OH-1004

Mitochondrion0.008

Rank 5 · LXL04_011498 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02362.27B323-100 aa

PF02362.27B3221-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011498	`PF02362.27`	B3	23	100	1.9e-29	102.3
LXL04_011498	`PF02362.27`	B3	221	315	1.9e-29	102.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FGD2`	Arabidopsis thaliana	Putative B3 domain-containing protein At5g66980	23.167%	Swiss-Prot	weak database homology
`Q9ZSH7`	Arabidopsis thaliana	B3 domain-containing protein At4g01580	29.060%	Swiss-Prot	weak database homology
`Q84R27`	Arabidopsis thaliana	B3 domain-containing protein At3g18960	27.885%	Swiss-Prot	weak database homology
`Q2R9D2`	Oryza sativa subsp. japonica	B3 domain-containing protein Os11g0197600	21.667%	Swiss-Prot	weak database homology
`Q5N6V0`	Oryza sativa subsp. japonica	B3 domain-containing protein Os01g0905400	29.703%	Swiss-Prot	weak database homology

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