LXL04_011407 | RubberDandelionOmics

Gene overview

LXL04_011407

Reference: OH-1004 Chr: Chr02 Coordinates: 163866044-163868918 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

786 bp · LXL04_011407|LXL04_011407|OH1004|cDNA

ATGTCGAATGAAAAGGAGCGAGAAAATCATGTTTATTTGGCGAAGCTCGCTGAACAAGCCGAGCGTTACGATGAAATGGTTGAAAGCATGAAGAATGTTGCCAAACTTAACGTTGAACTTACTGTTGAAGAGCGCAACCTACTATCAGTAGGATACAAGAACGTGATTGGAGCAAGGAGAGCCTCATGGCGTATCATGTCATCaattgaacaaaaagaagaatCAAAAGGAAACGAAAGCTATGTCAATCTCATCAAAGG...

CDS

Download CDS FASTA

786 bp · LXL04_011407|LXL04_011407|OH1004|CDS

ATGTCGAATGAAAAGGAGCGAGAAAATCATGTTTATTTGGCGAAGCTCGCTGAACAAGCCGAGCGTTACGATGAAATGGTTGAAAGCATGAAGAATGTTGCCAAACTTAACGTTGAACTTACTGTTGAAGAGCGCAACCTACTATCAGTAGGATACAAGAACGTGATTGGAGCAAGGAGAGCCTCATGGCGTATCATGTCATCAATTGAACAAAAAGAAGAATCAAAAGGAAACGAAAGCTATGTCAATCTCATCAAAGG...

Protein

Download Protein FASTA

261 aa · LXL04_011407|LXL04_011407|OH1004|PROTEIN

MSNEKERENHVYLAKLAEQAERYDEMVESMKNVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESYVNLIKGYRKKVEDELAKICSDILEIIDKHLVPSSGSGEATVFYYKMKGDYFRYLAEFKTDEERKEAADKSLKGYEAASESANKELPSTHPIRLGLALNFSVFYYEIMNSPEKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENPKAEEGKSAEPEQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011407`
TK1151 ID	TkA02G610800
OH-1004 ID	LXL04_011407
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.300
Protein coverage (%)	TK1151 88.281 / OH-1004 43.295 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011407

Location Chr02:163866044-163868918 (-)

Description Similar to GRF12: 14-3-3-like protein GF14 iota

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g26480`	Is associated with a DNA binding complex that binds to the G box, a well-characterized cis-acting DNA regulatory element found in plant genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011407 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0008104 intracellular protein localization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0045309 protein phosphorylated amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G26480

gmx:547990

sly:544213

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.737

Rank 1 · LXL04_011407 · OH-1004

Nucleus0.346

Rank 2 · LXL04_011407 · OH-1004

Cell membrane0.089

Rank 3 · LXL04_011407 · OH-1004

Golgi apparatus0.072

Rank 4 · LXL04_011407 · OH-1004

Mitochondrion0.061

Rank 5 · LXL04_011407 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00244.2714-3-313-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011407	`PF00244.27`	14-3-3	13	235	5e-108	360.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C5W6`	Arabidopsis thaliana	14-3-3-like protein GF14 iota	84.462%	Swiss-Prot	strong database homology

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