LXL04_011381 | RubberDandelionOmics

Gene overview

LXL04_011381

Reference: OH-1004 Chr: Chr02 Coordinates: 163540469-163547053 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1644 bp · LXL04_011381|LXL04_011381|OH1004|cDNA

ATGCACCAAGATGAGAGGTTCTTCTTTTTTGCTTTGCGTAGCCTGTACAGAATTGCGTATATTCAGTGGGATTCTTTTCTACCATCTCTTCTTTCTTCTGTCACATCTGCAGAAATGTCTGCAAATCCGGAATCTTCTTTAATTTCAATTCATGGAATTGGATCTCCATCTCAATCATCAGCAAATGAAACATCATATACAGCTTTATCTCCTTCAAAATCATTAATATCAATAGTCACTCTGCGTAAGTTATCTTGTGA...

CDS

Download CDS FASTA

1644 bp · LXL04_011381|LXL04_011381|OH1004|CDS

ATGCACCAAGATGAGAGGTTCTTCTTTTTTGCTTTGCGTAGCCTGTACAGAATTGCGTATATTCAGTGGGATTCTTTTCTACCATCTCTTCTTTCTTCTGTCACATCTGCAGAAATGTCTGCAAATCCGGAATCTTCTTTAATTTCAATTCATGGAATTGGATCTCCATCTCAATCATCAGCAAATGAAACATCATATACAGCTTTATCTCCTTCAAAATCATTAATATCAATAGTCACTCTGCGTAAGTTATCTTGTGA...

Protein

Download Protein FASTA

547 aa · LXL04_011381|LXL04_011381|OH1004|PROTEIN

MHQDERFFFFALRSLYRIAYIQWDSFLPSLLSSVTSAEMSANPESSLISIHGIGSPSQSSANETSYTALSPSKSLISIVTLRKLSCEIISYAMESNLNPSTHADIFHQMMKWLVNLDHKNPLSEWLHKCLNVVYMLVDENKCRVPFYELLRSELQFMENLPDNKSLFTLILEVHRRRDMMAMILHFRFRDEVLIGRELYVVLSTLFVIRHHLIGGGMCFLWRHVTTVNFPISKVNSILMYWSLYVTNGYKTKNLPKLADC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011381`
TK1151 ID	TkA03G585610
OH-1004 ID	LXL04_011381
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 92.350 / OH-1004 30.896 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011381

Location Chr02:163540469-163547053 (+)

Description Similar to MED23: Mediator of RNA polymerase II transcription subunit 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g23230`	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011381 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0005634 nucleus Cellular Component

GO:0005667 transcription regulator complex Cellular Component

GO:0016592 mediator complex Cellular Component

KEGG gene cross-reference

ath:AT1G23230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.482

Rank 1 · LXL04_011381 · OH-1004

Nucleus0.414

Rank 2 · LXL04_011381 · OH-1004

Mitochondrion0.063

Rank 3 · LXL04_011381 · OH-1004

Golgi apparatus0.055

Rank 4 · LXL04_011381 · OH-1004

Lysosome / Vacuole0.047

Rank 5 · LXL04_011381 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11573.14Med23255-461 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011381	`PF11573.14`	Med23	255	461	2.2e-09	36.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4I4P3`	Arabidopsis thaliana	Mediator of RNA polymerase II transcription subunit 23	42.754%	Swiss-Prot	moderate database homology

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