LXL04_011344 | RubberDandelionOmics

Gene overview

LXL04_011344

Reference: OH-1004 Chr: Chr02 Coordinates: 162856477-162859874 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2048 bp · LXL04_011344|LXL04_011344|OH1004|cDNA

TTGtacaaaagaaaaagaaagcaGTAGAACACGGAGCATACCACGTTTGTTCCTCACGACTGCGCCATTACCTTACGTCAACTCCAGAGTCCAGCCACCGTCCTCCGCCGTCTCCTCCCGCCGTGCACGTGTGTCCACCACATCAACACTCTTCGAATcttcatctctctcTACCTCACTGGCTTCCTTCTAATCTCACACAAACACACATTACATTCTCTGATACACACACATCTCTGTGTTTTTCACAatatacatct...

CDS

Download CDS FASTA

1989 bp · LXL04_011344|LXL04_011344|OH1004|CDS

CTGCGCCATTACCTTACGTCAACTCCAGAGTCCAGCCACCGTCCTCCGCCGTCTCCTCCCGCCGTGCACGTGTGTCCACCACATCAACACTCTTCGAATCTTCATCTCTCTCTACCTCACTGGCTTCCTTCTAATCTCACACAAACACACATTACATTCTCTGATACACACACATCTCTGTGTTTTTCACAATATACATCTGTAAGTGTATCTCTATATCTGGGGCAAAAAAAGGGGCGAAGGGGAAGCTACTTGATTCG...

Protein

Download Protein FASTA

662 aa · LXL04_011344|LXL04_011344|OH1004|PROTEIN

MRHYLTSTPESSHRPPPSPPAVHVCPPHQHSSNLHLSLPHWLPSNLTQTHITFSDTHTSLCFSQYTSVSVSLYLGQKKGRRGSYLIRIPYPYNVICTREMHAKNRLPSSGHNTPSPPASPLRSPRLRHPRSGKSAARFGLGVNRSFTQRVAWIVLSFLLRRQGVFLFAPLLYISGMLFYMGTVSFDVVPDVIKARRAPGSVYRSPELYSKLRHEMDADNSTSDAMSTIWKHAKGGDWRPCINKFSGGLPESNGYIYVEAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011344`
TK1151 ID	TkA03G583080
OH-1004 ID	LXL04_011344
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.500
Protein coverage (%)	TK1151 86.390 / OH-1004 91.088 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011344

Location Chr02:162856477-162859874 (+)

Description Similar to ESMD1: Protein ESMERALDA 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01480`	Glycosyltransferase that plays a role in cell adhesion.	No verified direct reference in this release
`At1g14970`	O-fucosyltransferase 4.	No verified direct reference in this release
`At1g35510`	O-fucosyltransferase 9.	No verified direct reference in this release
`At1g38131`	O-fucosyltransferase 11.	No verified direct reference in this release
`At1g38065`	O-fucosyltransferase 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011344 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0007155 cell adhesion Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14970

ath:AT1G35510

ath:AT1G38065

ath:AT1G38131

ath:AT2G01480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.809

Rank 1 · LXL04_011344 · OH-1004

Endoplasmic reticulum0.073

Rank 2 · LXL04_011344 · OH-1004

Cell membrane0.065

Rank 3 · LXL04_011344 · OH-1004

Cytoplasm0.046

Rank 4 · LXL04_011344 · OH-1004

Extracellular0.043

Rank 5 · LXL04_011344 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250.16O-FucT254-584 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011344	`PF10250.16`	O-FucT	254	584	3e-101	340.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVF7`	Arabidopsis thaliana	Protein ESMERALDA 1	78.815%	Swiss-Prot	strong database homology
`F4HXW9`	Arabidopsis thaliana	O-fucosyltransferase 4	72.954%	Swiss-Prot	strong database homology
`Q8H1E6`	Arabidopsis thaliana	O-fucosyltransferase 9	55.451%	Swiss-Prot	strong database homology
`Q8GUM0`	Arabidopsis thaliana	O-fucosyltransferase 11	55.645%	Swiss-Prot	strong database homology
`Q8LNP3`	Arabidopsis thaliana	O-fucosyltransferase 10	60.048%	Swiss-Prot	moderate database homology

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