Gene Card
Gene overview
cDNA / CDS / Protein Sequences
3132 bp · LXL04_011340|LXL04_011340|OH1004|cDNA
CTTGAAGCCATGAAAATTGTTAAGCCCCAAAAATTTAGAACTCAAAACAGTTTACAGAGATCAACTAGCGGAAAGCAGTTGGAGTAGAGGAAAACATGGTTTATGCGTATACACTAAACCTTTACTAAAAAACAATCCCCTTCATCAGATTCCCTCCCGCTTTCTCTCTCTTAACTTCAATTTTAGTTTCCGGCAACACCAAGAAAATTCAGATTGCCGGATTCTAACCCACAAGAGAATTTGCTGTTCTTGCTGCTTAT...
2919 bp · LXL04_011340|LXL04_011340|OH1004|CDS
TTGCCGGATTCTAACCCACAAGAGAATTTGCTGTTCTTGCTGCTTATCATCATGGATGATGATGTAGTGCACCGAGTTTTACAAGAAGGTGGCCGAGATTACTACCAACAAACCCCCTCTACTTCCTCATCGTCTCCGTCTATTCTTCAATCTCTTCCCCTTCATGCGTCTTTTGATCGTGGGTATTACTTGTTGGTGAAATCAATACAAGAACTTAGATCAAAAAAAGAGGGCATTGTAGCTGTTGGCATTGGTGGTCC...
Protein
Download Protein FASTA972 aa · LXL04_011340|LXL04_011340|OH1004|PROTEIN
MPDSNPQENLLFLLLIIMDDDVVHRVLQEGGRDYYQQTPSTSSSSPSILQSLPLHASFDRGYYLLVKSIQELRSKKEGIVAVGIGGPSGSGKSSLAEKVASVIGCSVISMENYRTGADEGNDLNLIDFDLLVQNLQDLLKGNDILTPVFDFQTKRRTGTKEIKSTSFGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVQYDIGESCSLDNLIDSIFPLFRKHIEPDLHHAQIRINNSFGQSFRDSIYKLKCKSE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011340 |
|---|---|
| TK1151 ID | TkA03G582750 |
| OH-1004 ID | LXL04_011340 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.800 |
| Protein coverage (%) | TK1151 97.277 / OH-1004 95.576Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011340 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:162772681-162779193 (+) | |||||||||
| Description | Similar to udkC: Uridine-cytidine kinase C | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002237 response to molecule of bacterial origin Biological Process GO:0002239 response to oomycetes Biological Process GO:0006952 defense response Biological Process GO:0009626 plant-type hypersensitive response Biological Process GO:0009751 response to salicylic acid Biological Process GO:0010113 negative regulation of systemic acquired resistance Biological Process GO:0044206 UMP salvage Biological Process GO:0044211 CTP salvage Biological Process GO:0098542 defense response to other organism Biological Process GO:1900055 regulation of leaf senescence Biological Process GO:1900425 negative regulation of defense response to bacterium Biological Process GO:1902289 negative regulation of defense response to oomycetes Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G26190 ath:AT1G73980 ddi:DDB_G0283371 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00485.25PRK82-240 aaPF00485.25PRK536-703 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011340 | PF00485.25 | PRK | 82 | 240 | 1.6e-29 | 103.9 |
| LXL04_011340 | PF00485.25 | PRK | 536 | 703 | 1.6e-29 | 103.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.