Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1446 bp · LXL04_011194|LXL04_011194|OH1004|cDNA
ATGGCAGCCGAAAGTTCTAGATCTTCAACATCATCGGCCGATACGTACATTGGAAGCTTGATTAGTTTGACGTCCAAAAGCGAGATACGATATGAGGGAATTTTGTACAACATCAACACCGAAGAATCCTCAATTGGGCTGCGTAACGTAAGATCATTTGGAAGTGAAGGCCGGAAAAAAGATGGTCCACAAATCATTCCTAGTGAAAAAGTCTACGAATACATTCTATTTCGTGGAAGTGACATCAAGGATCTTCAGGT...
1446 bp · LXL04_011194|LXL04_011194|OH1004|CDS
ATGGCAGCCGAAAGTTCTAGATCTTCAACATCATCGGCCGATACGTACATTGGAAGCTTGATTAGTTTGACGTCCAAAAGCGAGATACGATATGAGGGAATTTTGTACAACATCAACACCGAAGAATCCTCAATTGGGCTGCGTAACGTAAGATCATTTGGAAGTGAAGGCCGGAAAAAAGATGGTCCACAAATCATTCCTAGTGAAAAAGTCTACGAATACATTCTATTTCGTGGAAGTGACATCAAGGATCTTCAGGT...
Protein
Download Protein FASTA481 aa · LXL04_011194|LXL04_011194|OH1004|PROTEIN
MAAESSRSSTSSADTYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGSEGRKKDGPQIIPSEKVYEYILFRGSDIKDLQVKTSPPVQPTQPINSDPAIIQSHYPRPNLTPSTLPATATQNSFPDQTTPTPTPQVGHPGIPLYHPDGTMGSWGPSPPPSNSNVPMYWPGFYPQLHQQSMFRPMQQYPNFNTPLPGGPPPEYSSTTLPSNLPPVPPLVLTTEPLPNFLQTKPFNNTVSTVSTPDVNVTTVPPLVT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011194 |
|---|---|
| TK1151 ID | TkA03G571770 |
| OH-1004 ID | LXL04_011194 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011194 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:159771997-159774367 (+) | |||||||||
| Description | Similar to DCP5: Protein decapping 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0006417 regulation of translation Biological Process GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly Biological Process GO:0017148 negative regulation of translation Biological Process GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA Biological Process GO:0033962 P-body assembly Biological Process GO:0034063 stress granule assembly Biological Process GO:0000932 P-body Cellular Component GO:0005634 nucleus Cellular Component GO:1990904 ribonucleoprotein complex Cellular Component GO:0003729 mRNA binding Molecular Function GO:0042803 protein homodimerization activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G26110 ath:AT5G45330 xla:734709 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14438.13SM-ATX14-88 aaPF12701.14LSM1416-88 aaPF09532.16FDF344-440 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011194 | PF14438.13 | SM-ATX | 14 | 88 | 2.2e-12 | 47.7 |
| LXL04_011194 | PF12701.14 | LSM14 | 16 | 88 | 1.6e-31 | 108.9 |
| LXL04_011194 | PF09532.16 | FDF | 344 | 440 | 3.4e-20 | 73.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.