LXL04_011103 | RubberDandelionOmics

Gene overview

LXL04_011103

Reference: OH-1004 Chr: Chr02 Coordinates: 157899303-157900910 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · LXL04_011103|LXL04_011103|OH1004|cDNA

ATGGACCGACAAAGATCGTGGTTAATGGCAGTTTTGGTGCTGGCATGGTGGTGGAAAGGTGTCATAGGAGCGGCGCAGGCTCCGGCAATATGGGTGATGGGAGATTCGTTGGTGGATAACGGCAATAACAACTTCCTAAATTCCATTGCTAAAGCTAATTTTTATCCTTACGGCATCGATTACTATCGTGGTCCTTCCGGTAGATTTTGTAATGCAAGAACATTCAGCGACATTCTGGGCGATTGGTTGGGAATAGCAGC...

CDS

Download CDS FASTA

1095 bp · LXL04_011103|LXL04_011103|OH1004|CDS

ATGGACCGACAAAGATCGTGGTTAATGGCAGTTTTGGTGCTGGCATGGTGGTGGAAAGGTGTCATAGGAGCGGCGCAGGCTCCGGCAATATGGGTGATGGGAGATTCGTTGGTGGATAACGGCAATAACAACTTCCTAAATTCCATTGCTAAAGCTAATTTTTATCCTTACGGCATCGATTACTATCGTGGTCCTTCCGGTAGATTTTGTAATGCAAGAACATTCAGCGACATTCTGGGCGATTGGTTGGGAATAGCAGC...

Protein

Download Protein FASTA

364 aa · LXL04_011103|LXL04_011103|OH1004|PROTEIN

MDRQRSWLMAVLVLAWWWKGVIGAAQAPAIWVMGDSLVDNGNNNFLNSIAKANFYPYGIDYYRGPSGRFCNARTFSDILGDWLGIAAPPPFSDPTTAGNRILGGVNYASAAGGILDESGLNYGDRYTLSQQVVNFETTLGQLRSMMSPGNLTQLLSNSIVVMVFGSNDYINNYFLTNGYSTTRGYTPEAFANLLLTRYARQIHALYSLGLRKFFIPGIGPLGCIPSILATGQAPAGRCVDSVNQMLGPFNEGLKRLVDQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011103`
TK1151 ID	TkA03G565400
OH-1004 ID	LXL04_011103
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.600
Protein coverage (%)	TK1151 92.490 / OH-1004 64.286 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011103

Location Chr02:157899303-157900910 (-)

Description Similar to At1g71250: GDSL esterase/lipase At1g71250

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71250`	GDSL esterase/lipase At1g71250.	No verified direct reference in this release
`At5g08460`	GDSL esterase/lipase At5g08460.	No verified direct reference in this release
`At1g29670`	GDSL esterase/lipase At1g29670.	No verified direct reference in this release
`At1g29660`	Involved in EDS1-dependent systemic acquired resistance, maybe in phloem-mediated long-distance signaling.	No verified direct reference in this release
`At5g15720`	GDSL esterase/lipase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011103 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G29660

ath:AT1G29670

ath:AT1G71250

ath:AT5G08460

ath:AT5G15720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.680

Rank 1 · LXL04_011103 · OH-1004

Endoplasmic reticulum0.079

Rank 2 · LXL04_011103 · OH-1004

Cell membrane0.077

Rank 3 · LXL04_011103 · OH-1004

Lysosome / Vacuole0.064

Rank 4 · LXL04_011103 · OH-1004

Cytoplasm0.064

Rank 5 · LXL04_011103 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL31-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011103	`PF00657.29`	Lipase_GDSL	31	342	1.1e-28	101.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FVV1`	Arabidopsis thaliana	GDSL esterase/lipase At1g71250	64.773%	Swiss-Prot	strong database homology
`Q9FNP2`	Arabidopsis thaliana	GDSL esterase/lipase At5g08460	51.253%	Swiss-Prot	strong database homology
`Q9C7N4`	Arabidopsis thaliana	GDSL esterase/lipase At1g29670	47.790%	Swiss-Prot	moderate database homology
`Q9C7N5`	Arabidopsis thaliana	GDSL esterase/lipase At1g29660	47.934%	Swiss-Prot	moderate database homology
`Q8LFJ9`	Arabidopsis thaliana	GDSL esterase/lipase 7	48.824%	Swiss-Prot	moderate database homology

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