LXL04_011084 | RubberDandelionOmics

Gene overview

LXL04_011084

Reference: OH-1004 Chr: Chr02 Coordinates: 157681443-157682096 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_011084|LXL04_011084|OH1004|cDNA

ATGAAGTTGAAGCTTTTAATTCCGACTCTATTATCCACACTCCTCTCTTCCTTATATATAACATCTCCTCAACCCCTAAAAAACACCATCACTACCACCACTACCATCATCAGTACATCGTCCCCCTTCGACTCTGATGGTCATGAGGTCCAACCGGACTTAAGGTACCATATAACCCCAATCCAATCCAACGAGAGTGGTGGTGGCCTCTCTCTTGCTTCACGAGGCGGTTTTTGCCCTCCCTTTGTCATTCAAGAAAA...

CDS

Download CDS FASTA

654 bp · LXL04_011084|LXL04_011084|OH1004|CDS

ATGAAGTTGAAGCTTTTAATTCCGACTCTATTATCCACACTCCTCTCTTCCTTATATATAACATCTCCTCAACCCCTAAAAAACACCATCACTACCACCACTACCATCATCAGTACATCGTCCCCCTTCGACTCTGATGGTCATGAGGTCCAACCGGACTTAAGGTACCATATAACCCCAATCCAATCCAACGAGAGTGGTGGTGGCCTCTCTCTTGCTTCACGAGGCGGTTTTTGCCCTCCCTTTGTCATTCAAGAAAA...

Protein

Download Protein FASTA

217 aa · LXL04_011084|LXL04_011084|OH1004|PROTEIN

MKLKLLIPTLLSTLLSSLYITSPQPLKNTITTTTTIISTSSPFDSDGHEVQPDLRYHITPIQSNESGGGLSLASRGGFCPPFVIQENTQLSKGLPLRFLPLDTKQNSITLSSDLNILFSAATICVQSTVWRVISGGGFGGGRHYVRSGGVVGRPGVDTVSNWFRIEKVGDIGYKFVFCPNVCSSCKVVCGDVGVLEENGKKWLALGDLPLVFRFQKA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011084`
TK1151 ID	TkA03G565080
OH-1004 ID	LXL04_011084
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011084

Location Chr02:157681443-157682096 (-)

Description Similar to Miraculin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17860`	Can inhibit both serine proteases and cysteine proteases.	Arabidopsis Kunitz Trypsin Inhibitors in Defense Against Spider Mites.2018 · DOI: 10.3389/fpls.2018.00986
`At1g73260`	Exhibits Kunitz trypsin protease inhibitor activity.	Kunitz trypsin inhibitor: an antagonist of cell death triggered by phytopathogens and fumonisin b1 in Arabidopsis.2008 · DOI: 10.1093/mp/ssn013 Arabidopsis Kunitz Trypsin Inhibitors in Defense Against Spider Mites.2018 · DOI: 10.3389/fpls.2018.00986

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0526600`	This protein inhibits independently subtilisin and T.castaneum alpha-amylase but not barley alpha-amylase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011084 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006952 defense response Biological Process

GO:0009611 response to wounding Biological Process

GO:0009624 response to nematode Biological Process

GO:0009625 response to insect Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010466 negative regulation of peptidase activity Biological Process

GO:0012501 programmed cell death Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0005576 extracellular region Cellular Component

KEGG gene cross-reference

ath:AT1G17860

ath:AT1G73260

dosa:Os04g0526600

tcc:18604292

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.433

Rank 1 · LXL04_011084 · OH-1004

Endoplasmic reticulum0.217

Rank 2 · LXL04_011084 · OH-1004

Cytoplasm0.126

Rank 3 · LXL04_011084 · OH-1004

Lysosome / Vacuole0.120

Rank 4 · LXL04_011084 · OH-1004

Cell membrane0.106

Rank 5 · LXL04_011084 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00197.25Kunitz_legume43-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011084	`PF00197.25`	Kunitz_legume	43	216	3e-49	168.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMU2`	Arabidopsis thaliana	Kunitz trypsin inhibitor 5	38.857%	Swiss-Prot	moderate database homology
`Q8RXD5`	Arabidopsis thaliana	Kunitz trypsin inhibitor 4	39.665%	Swiss-Prot	moderate database homology
`P29421`	Oryza sativa subsp. japonica	Alpha-amylase/subtilisin inhibitor	39.106%	Swiss-Prot	moderate database homology

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