LXL04_010994 | RubberDandelionOmics

Gene overview

LXL04_010994

Reference: OH-1004 Chr: Chr02 Coordinates: 156200575-156201988 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

744 bp · LXL04_010994|LXL04_010994|OH1004|cDNA

ATGCAGGATATGCTCTGCAGCTTTTTCAGTGTTGTTGGTGATCCATCTAAAGGATTCTTCTGTTATGCCCAGGGCTACAGCACTCATTTCTTCTGTGTGGCATCATTCCTTTGGACCACCACCATTGCCTTTACACTTCATCGTACAGTTGTCAAACACAAAGCTGACGTGGAAGACTTTGAGCccatgtttcatttatatgttTGGGGAACTTCGGTTGTTATGACAGTTGTCAGATTTATTGGTAATGACCATGGACA...

CDS

Download CDS FASTA

744 bp · LXL04_010994|LXL04_010994|OH1004|CDS

ATGCAGGATATGCTCTGCAGCTTTTTCAGTGTTGTTGGTGATCCATCTAAAGGATTCTTCTGTTATGCCCAGGGCTACAGCACTCATTTCTTCTGTGTGGCATCATTCCTTTGGACCACCACCATTGCCTTTACACTTCATCGTACAGTTGTCAAACACAAAGCTGACGTGGAAGACTTTGAGCCCATGTTTCATTTATATGTTTGGGGAACTTCGGTTGTTATGACAGTTGTCAGATTTATTGGTAATGACCATGGACA...

Protein

Download Protein FASTA

247 aa · LXL04_010994|LXL04_010994|OH1004|PROTEIN

MQDMLCSFFSVVGDPSKGFFCYAQGYSTHFFCVASFLWTTTIAFTLHRTVVKHKADVEDFEPMFHLYVWGTSVVMTVVRFIGNDHGHAVHFFMFYAPLWGAILFNGFTYFQVIRMLNNATRMAVGMSDRGSQSDTRADMKALNRWGYYPLILIGSWSFGTVNRIHDFIEPDHKIFWLSVLDVGMASLMGLFNSIAYGLNSSVRKAIFERLDLLPEGLRRWFPKKLKSRSQQQQHDSDKHHKCSMKCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010994`
TK1151 ID	TkA06G083820
OH-1004 ID	LXL04_010994
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 62.753 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010994

Location Chr02:156200575-156201988 (+)

Description Similar to GCR1: G-protein coupled receptor 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g48270`	Together with GPA1, may regulate the cell cycle via a signaling cascade that uses phosphatidylinositol-specific phospholipase C (PI-PLC) as an effector and inositol 1,4,5-trisphosphate(IP(3)) as a second messenger.	GCR1, the putative Arabidopsis G protein-coupled receptor gene is cell cycle-regulated, and its overexpression abolishes seed dormancy and shortens time to flowering.2002 · DOI: 10.1073/pnas.072087699 The G-protein-coupled receptor GCR1 regulates DNA synthesis through activation of phosphatidylinositol-specific phospholipase C.2003 · DOI: 10.1104/pp.103.026005 The Arabidopsis putative G protein-coupled receptor GCR1 interacts with the G protein alpha subunit GPA1 and regulates abscisic acid signaling.2004 · DOI: 10.1105/tpc.020321 GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination.2004 · DOI: 10.1104/pp.104.038992 G-protein-coupled receptor 1, G-protein Galpha-subunit 1, and prephenate dehydratase 1 are required for blue light-induced production of phenylalanine in etiolated Arabidopsis.2006 · DOI: 10.1104/pp.105.071282 The GCR1, GPA1, PRN1, NF-Y signal chain mediates both blue light and abscisic acid responses in Arabidopsis.2007 · DOI: 10.1104/pp.106.089904 A higher plant seven-transmembrane receptor that influences sensitivity to cytokinins.1998 · DOI: 10.1016/s0960-9822(98)70131-9

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010994 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0002029 desensitization of G protein-coupled receptor signaling pathway Biological Process

GO:0006571 L-tyrosine biosynthetic process Biological Process

GO:0006629 lipid metabolic process Biological Process

GO:0006935 chemotaxis Biological Process

GO:0007186 G protein-coupled receptor signaling pathway Biological Process

GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway Biological Process

GO:0008277 regulation of G protein-coupled receptor signaling pathway Biological Process

GO:0009094 L-phenylalanine biosynthetic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

KEGG gene cross-reference

ath:AT1G48270

ddi:DDB_G0273397

ddi:DDB_G0273533

ddi:DDB_G0277829

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.775

Rank 1 · LXL04_010994 · OH-1004

Cytoplasm0.158

Rank 2 · LXL04_010994 · OH-1004

Endoplasmic reticulum0.063

Rank 3 · LXL04_010994 · OH-1004

Lysosome / Vacuole0.058

Rank 4 · LXL04_010994 · OH-1004

Golgi apparatus0.047

Rank 5 · LXL04_010994 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05462.18Dicty_CAR15-201 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010994	`PF05462.18`	Dicty_CAR	15	201	1.6e-08	34.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04714`	Arabidopsis thaliana	G protein-coupled receptor 1	73.494%	Swiss-Prot	strong database homology

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