LXL04_010898 | RubberDandelionOmics

Gene overview

LXL04_010898

Reference: OH-1004 Chr: Chr02 Coordinates: 155001862-155002860 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

999 bp · LXL04_010898|LXL04_010898|OH1004|cDNA

atgCCAGAAAGTTTAGAAAAAAGTAATTTATTTTCCGTGGGTTACGCATTGCCTGAAAGAAAGATCGAAGCTTTCATGGTGCCAACATTCATCAATTACGCAAAAGAACGAGGGATAAATTTCATCCCAATTGACGTTTCCAAGCCACTCACGGAACAAGGTCCATTCGATTGCATAATTCACAAACTTTACGGCGATGAATGGGACCTCAATCTGAAGAATTTCTCCGACAACAACCCAAACGCCACCGTCGTTGACCA...

CDS

Download CDS FASTA

999 bp · LXL04_010898|LXL04_010898|OH1004|CDS

ATGCCAGAAAGTTTAGAAAAAAGTAATTTATTTTCCGTGGGTTACGCATTGCCTGAAAGAAAGATCGAAGCTTTCATGGTGCCAACATTCATCAATTACGCAAAAGAACGAGGGATAAATTTCATCCCAATTGACGTTTCCAAGCCACTCACGGAACAAGGTCCATTCGATTGCATAATTCACAAACTTTACGGCGATGAATGGGACCTCAATCTGAAGAATTTCTCCGACAACAACCCAAACGCCACCGTCGTTGACCA...

Protein

Download Protein FASTA

332 aa · LXL04_010898|LXL04_010898|OH1004|PROTEIN

MPESLEKSNLFSVGYALPERKIEAFMVPTFINYAKERGINFIPIDVSKPLTEQGPFDCIIHKLYGDEWDLNLKNFSDNNPNATVVDHPSAIQRLHDRISMLEPVTQLNIPQLNIPNQLLVRDSESLKSFETAKDLKFPMMAKSLIADGSPDAHTMSLVLNHEGLTTGLDFEPPLVLQQFVNHGGIIFKTYIADDYVECVKRSSLPDISEEAMEKMASESNGVMSFSKISAAVMAGDDGKNNNNSSDEKLKMPAPEFLEEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010898`
TK1151 ID	TkA03G554770
OH-1004 ID	LXL04_010898
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 58.434 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010898

Location Chr02:155001862-155002860 (-)

Description Similar to ITPK5: Inositol-tetrakisphosphate 1-kinase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16760`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0576100`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release
`UniProt: A0JJZ6`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_010898 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0048316 seed development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0000825 inositol-1,3,4,5-tetrakisphosphate 6-kinase activity Molecular Function

GO:0000832 inositol hexakisphosphate 5-kinase activity Molecular Function

GO:0005102 signaling receptor binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0047325 inositol-3,4,5,6-tetrakisphosphate 1-kinase activity Molecular Function

KEGG gene cross-reference

ath:AT5G16760

dosa:Os10g0576100

gmx:100127430

zma:732818

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.783

Rank 1 · LXL04_010898 · OH-1004

Nucleus0.343

Rank 2 · LXL04_010898 · OH-1004

Endoplasmic reticulum0.055

Rank 3 · LXL04_010898 · OH-1004

Cell membrane0.053

Rank 4 · LXL04_010898 · OH-1004

Mitochondrion0.052

Rank 5 · LXL04_010898 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17927.8Ins134_P3_kin_N13-91 aa

PF05770.17Ins134_P3_kin112-312 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010898	`PF17927.8`	Ins134_P3_kin_N	13	91	3.5e-29	101.7
LXL04_010898	`PF05770.17`	Ins134_P3_kin	112	312	1.2e-62	211.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SBA5`	Arabidopsis thaliana	Inositol-tetrakisphosphate 1-kinase 1	44.582%	Swiss-Prot	moderate database homology
`Q7XBW0`	Oryza sativa subsp. japonica	Inositol-tetrakisphosphate 1-kinase 5	45.833%	Swiss-Prot	moderate database homology
`A0JJZ6`	Oryza sativa subsp. indica	Inositol-tetrakisphosphate 1-kinase 5	45.833%	Swiss-Prot	moderate database homology

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